Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01001 ATGTCCAAAGAAAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAAACCGATGTATCATCAAATATTCCTCCACAACAAATCATGGGGAGACGCCATTCCTTGCAGGCTTCTCCAGGGATACTCAATACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTTTCCCCCTACTTCTCGCCTCACGAGCCTCATAAATTCGCCTCGGTTCACAAGGTTTTCGGTGCTAGTAATGTCTCGAAGATGCTCATGGAAGTTTCTGAGAATCAGAGAGCGGATGCTGCGAACAGCTTAGTTTATGAAGCGAATGTGAGGCTTCGAGATCCTGTTTATGGATGCATGGGCGCCATTTCGTCCTTACAACACCAAATTCAAGCCTTACAAATTGAGTTAAACGCGGTGAGAGCTGAGATCTTAAGACACAAATTTAGAGAAGCTAGTAATATGATTCACTCTTCTCCTCAACCACAACAACAACAACATGCGTCTTTTCTTTCATCTTCGGCCGAGGTTGTTTCGGTTGCCGTTCCACCACCGCCACCGTCTCTACCGCTACCTCCGCCATCTCATCACGACGCTTCTTCCTCTTCCTCCCCTTTGTACAACCGTCCCACAGTGGCAACGGATTATAATACCATTTCAAGCAACGAGAATGTTACCTACTTTGTTAGTACAACAACTACGGATCATCAATTGAATTCTTAG 738 45.39 MSKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQASPGILNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISSLQHQIQALQIELNAVRAEILRHKFREASNMIHSSPQPQQQQHASFLSSSAEVVSVAVPPPPPSLPLPPPSHHDASSSSSPLYNRPTVATDYNTISSNENVTYFVSTTTTDHQLNS 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5755961 5756985 - Carg00177-RA Car04g01001 146426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01001 245 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Car04g01001 245 Pfam Lateral organ boundaries (LOB) domain 49 146 IPR004883 -
Car04g01001 245 MobiDBLite consensus disorder prediction 200 214 - -
Car04g01001 245 MobiDBLite consensus disorder prediction 185 199 - -
Car04g01001 245 MobiDBLite consensus disorder prediction 180 214 - -
Car04g01001 245 Coils Coil 128 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01001 Car-Chr4:5755961 Car19g00864 Car-Chr19:8993376 3.69E-49 dispersed
Car15g00168 Car-Chr15:906004 Car04g01001 Car-Chr4:5755961 3.63E-80 wgd
Car04g00107 Car-Chr4:584333 Car04g01001 Car-Chr4:5755961 1.70E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3322 PF03195 LOB 7.10E-40 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01001 - - csv:101219425 370.933