Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01016 ATGGATGAAATCCAAACCCCATGTGATTCCACCTCTTGTTCGAGACACCCACTTCCGGATTTTCATGTTTTGTTTACTCAGTCCGCTGCTGATGGGTTCTGTTCTTCAGGAAACGAGCAGGAAAAATGGAAGATTCTGAGAAAAAACCCTAATGGGTTCCGTTTTGGATTGGGTTTGTTCTTTTTGTTGCTTAATTTGGTCACCATTCGACCTGTTTTGAGCCAAGATTGGGATGGTGTGGTTGTCACACAGGCTGATTTCCAATCCCTTCAGGCGTTTAAGCAGGAGCTTGATGATCCTAAAGGGTTCTTGAAAAGTTGGAACGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGTTGGGATTAAATGTGCTAAGGGACAGGTTATTGTTATTCAGCTTCCATGGAAGGGCTTGGGAGGTAGAATCACTGATAAGATCGGCCAACTTCAGGCCCTTAGGAAGCTCAGCTTACATGACAACTTCATAGGTGGATCAATCCCTTCTTCATTGGGACTTCTTCCGAATCTTCGAGGCGTTCAGTTGTTCAACAATCGATTTTCGGGTTCCATTCCGGCGTCATTGGGGCTTTGTCCTCTGCTTCAAACTCTTCATGTCAGTAACAATTTGCTCACCGGAGCTATCCCACCTACGTTGGCTAATTCCACCAAGCTTTATTGGCTTAACTTGAGCTTTAACTCGTTTTCGGGTTCGATCCCGATGAGTCTAACTCGATCGGTGTCGCTTACTTATCTTGATCTTCAACACAACAATCTCTCAGGCAGCATCCCCGACTCTTGGGGCAGCGACGCCACTGATCAAAACCGGGTGTTTCAGCTCAAGTCGATGGCTCTTGATGGCAATCTCCTCTCAGGTATCATACCAGCTTCTTTAAGCAAGTTAAGTGAGCTTCAAGTGGTTTCTCTTGGCCATAATAGATTGAATGGTGGCATTCCAGAAGAAATTAGTAGGCTTTCTCTGCTCAAAACTCTGGATGTTTCTAACAATTTCCTTAATGGAAGTATGCCTCAAAGTTTAGATAGTTTGAGAAATCTCTCTGTTCTTAACTTGAGTAGAAACAGGTTCAATGGTCAAATTCCTGCAAATTTAGGGAACATTTCAACACTTAAACAACTTGATTTATCTCAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGAATTGGAAGGTCTTCAATCCTTAAATGTCTCGTACAACAACCTTTCGGGTTCTGTTCCTTCGGCTCTCGCCGAAAAATTTAGTGCAAGTTCCTTTGTTGGGAACATCCAGCTCTGTGGGTTCAGTGGTTCGACTCCGTGCCCGTCCCCGGTTCCTTCTCTAGAATCTCCAGCTCCTCCACCGGAAAGTAAAGTGTCTCGACATCGGAAGTTAAGTACTAAAGATATAATACTCATAGTTGCAGGAGCTCTCCTTCTAGTATTGGTTATAGTATTCTTTGTACTGCTGTGCTGCTTGATTAGGAAGAGGGCTGCTTCAAAAGAAAAGGGTGGTGGTGATGCAGCAGCAGCCGGGGCTGCAAGGACGAAGAAGGACGTCCCTCCGACTAGCAGTGAAGTTGAAGTGGGAGGAGGGGATGCCGGTGGGAAGCTCGTCCATTTCGACGGGCAAACGGTGTTCACAGCAGATGATCTATTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTGAAGAGATTGAGAGAGAAGATCACTAAGAGCCAGAAAGAATTTGAAGCAGAGGTCAACATTCTTGGCAAGGTCAGGCATCCAAATCTTCTAGCTTTAAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTCGTTTTCGATTACATGCCGAACGGGAGTCTTGCAGCGTTCCTGCACGCTCGTGGACCGGACACATCCATTGATTGGCCGACGAGGATGAAGATTGCTCAGGGTATGACTCGTGGCCTGTGTCACCTTCACGCGCACGAGAACAGTATTCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACATAAATGCCAAGATTGCAGATTTTGGCTTGTCAAGGTTGATGACAGCAGCCGCAAGCTCAAATGTGATAGCAACAGCAGGGGCACTCGGGTATCGAGCACCAGAGCTCTCGAAGCTGAAGAAAGCAAATACGAAAACCGACATTTACAGCCTTGGAGTAATCATATTGGAACTCTTGACAGGGAAGTCCCCGGGTGAAGCCATGAACGGTGTCGATTTGCCACAATGGGTTGCATCAATAGTCAAAGAGGAGTGGACTAATGAAGTTTTCGATTTGGAGTTGATGAGGGATGCATCTAGCATTGGAGATGAATTACTAAACACTCTGAAACTCGCTTTGCATTGTGTCGATCCTTCACCGTCGGCAAGACCAGAAGTTCAACAAGTTCTGCAACAACTGGAGGAGATTAGGCCAGAAACCACTCCCAGTTCTGGGGATGATGGAGCAGGAGGAGGAGGACCCCCTTCAACAAGCGAGTGA 2550 45.92 MDEIQTPCDSTSCSRHPLPDFHVLFTQSAADGFCSSGNEQEKWKILRKNPNGFRFGLGLFFLLLNLVTIRPVLSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWVGIKCAKGQVIVIQLPWKGLGGRITDKIGQLQALRKLSLHDNFIGGSIPSSLGLLPNLRGVQLFNNRFSGSIPASLGLCPLLQTLHVSNNLLTGAIPPTLANSTKLYWLNLSFNSFSGSIPMSLTRSVSLTYLDLQHNNLSGSIPDSWGSDATDQNRVFQLKSMALDGNLLSGIIPASLSKLSELQVVSLGHNRLNGGIPEEISRLSLLKTLDVSNNFLNGSMPQSLDSLRNLSVLNLSRNRFNGQIPANLGNISTLKQLDLSQNNLSGEIPASLAELEGLQSLNVSYNNLSGSVPSALAEKFSASSFVGNIQLCGFSGSTPCPSPVPSLESPAPPPESKVSRHRKLSTKDIILIVAGALLLVLVIVFFVLLCCLIRKRAASKEKGGGDAAAAGAARTKKDVPPTSSEVEVGGGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKVRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLAAFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHAHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASSIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETTPSSGDDGAGGGGPPSTSE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5823672 5826351 + Carg00192-RA Car04g01016 146441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01016 849 MobiDBLite consensus disorder prediction 505 530 - -
Car04g01016 849 MobiDBLite consensus disorder prediction 825 849 - -
Car04g01016 849 ProSiteProfiles Leucine-rich repeat profile. 248 270 IPR001611 GO:0005515
Car04g01016 849 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Car04g01016 849 Pfam Protein tyrosine and serine/threonine kinase 558 823 IPR001245 GO:0004672|GO:0006468
Car04g01016 849 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515
Car04g01016 849 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515
Car04g01016 849 Pfam Leucine rich repeat 200 259 IPR001611 GO:0005515
Car04g01016 849 ProSiteProfiles Protein kinase domain profile. 555 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01016 Car-Chr4:5823672 Car05g01237 Car-Chr5:11570461 2.54E-17 dispersed
Car06g00674 Car-Chr6:4019850 Car04g01016 Car-Chr4:5823672 1.17E-25 dispersed
Car08g00054 Car-Chr8:332173 Car04g01016 Car-Chr4:5823672 1.57E-20 dispersed
Car16g00995 Car-Chr16:8424942 Car04g01016 Car-Chr4:5823672 5.07E-24 dispersed
Car17g01159 Car-Chr17:8944334 Car04g01016 Car-Chr4:5823672 1.87E-14 dispersed
Car14g00028 Car-Chr14:179009 Car04g01016 Car-Chr4:5823672 0 wgd
Car20g00263 Car-Chr20:1527659 Car04g01016 Car-Chr4:5823672 1.74E-12 wgd
Car04g00118 Car-Chr4:623801 Car04g01016 Car-Chr4:5823672 0 wgd
Car04g01016 Car-Chr4:5823672 Car06g00185 Car-Chr6:1115637 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88797 PF07714 PK_Tyr_Ser-Thr 1.80E-40 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01016 - - csv:101214895 1364.36