Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car04g01025 | ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGGCGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTCGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCACAGCTACAGATGCAATTGGCTGTCGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGAGAAACCCCCCACTCTTCTACTCCCCCCGCCGTCATCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGATGCCATTTTTGGACATGACATCGTTTCTTAA | 501 | 51.1 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5879567 | 5880708 | - | Carg00202-RA | Car04g01025 | 146450 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car04g01025 | 166 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
Car04g01025 | 166 | Coils | Coil | 85 | 105 | - | - | |
Car04g01025 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 2 | 122 | - | - | |
Car04g01025 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 12-LIKE | 2 | 122 | - | - | |
Car04g01025 | 166 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g01025 | Car-Chr4:5879567 | Car11g01652 | Car-Chr11:12991308 | 4.76E-55 | dispersed | |
Car02g00516 | Car-Chr2:4069449 | Car04g01025 | Car-Chr4:5879567 | 5.57E-66 | wgd | |
Car20g00287 | Car-Chr20:1663234 | Car04g01025 | Car-Chr4:5879567 | 1.06E-54 | wgd | |
Car04g00127 | Car-Chr4:676771 | Car04g01025 | Car-Chr4:5879567 | 2.04E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3323 | PF03195 | LOB | 3.70E-42 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car04g01025 | - | - | csv:101204801 | 318.546 |