Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01025 ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGGCGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTCGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCACAGCTACAGATGCAATTGGCTGTCGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGAGAAACCCCCCACTCTTCTACTCCCCCCGCCGTCATCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGATGCCATTTTTGGACATGACATCGTTTCTTAA 501 51.1 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5879567 5880708 - Carg00202-RA Car04g01025 146450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01025 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Car04g01025 166 Coils Coil 85 105 - -
Car04g01025 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 122 - -
Car04g01025 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 122 - -
Car04g01025 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01025 Car-Chr4:5879567 Car11g01652 Car-Chr11:12991308 4.76E-55 dispersed
Car02g00516 Car-Chr2:4069449 Car04g01025 Car-Chr4:5879567 5.57E-66 wgd
Car20g00287 Car-Chr20:1663234 Car04g01025 Car-Chr4:5879567 1.06E-54 wgd
Car04g00127 Car-Chr4:676771 Car04g01025 Car-Chr4:5879567 2.04E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3323 PF03195 LOB 3.70E-42 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01025 - - csv:101204801 318.546