Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01034 ATGACTCCATTATTCTCACCTCCAAAAGTTGCTTCACCACTCTACAAGTCGTACTCTCTGAATTATTCTTCTCCTTCTCCTTCTTATTCTTCTTTGCCGAGATCCGTGTCCTGTCCGCCGTCTGCCTCGTCATTGCCTGATGTTGATACTGTTTTGAAGAGGAAGAGGCCGGCGAGAATTGACGTGCCGACGATTGTGCCGTCCATCGGTTTTGGATTTGGAACTTTCGAGACGCCGGAGGTGATGGAGGAGGAAGGAGAAGGATATTCGGTTTATTGTAAAAGAGGAAGAAGACGGAGCGCCATGGAGGATCGATTCTCAGCCACAGTTCGAATTCAAGGAGATTCTCGGCAGGCTTTCTTCGGAATTTTCGATGGACACGGAGGAGCACAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCGAGAACGTAATCGATCAAGTAACGAGAAGAACCGAATCGGAACTCGAGGAAGCTATCAAAGACGGTTATCTGGCGACCGATCGGGAAGTATCGGAGGAAGGAGTCAGCGGCGGCGCCTGTTCCGCCACCGCATTGATACGGAACGGACATCTCGCAGTCTCGAACGTCGGCGATTGTCGCGCCGTGTTGAGCCGAAAGGGAAAAGCGGAAGCCCTAACCTCCGATCACCGAGCGTGTAGAGAAGACGAGAGAAATCGGATCGAAAAATCGGGCGGTTATGTAGACTGTTGCCGTGGGGCATGGAGAGTTCAAGGAACACTGGCTGTATCTCGAGCCATTGGAGACAAGCATCTGAAACAGTGGGTGATATCAGAGCCGGAGACGAGAGTAGTGAAGATCGAGGATGATTGCGATTACTTGATCCTTGCTTCTGATGGTCTTTGGGACAAGATTACGAATCAGGAAGCAGTAGACGTAGTGGAGGCAGCGTGCGGCGTGGAGATCATGGAGAATAAAAAACCAAATCCGCTATTAATGTCGGCCTGCAAACAGTTGGCGGCCTTGTCAGCATCAAGAGGCTCAGTCGACGATACCACTGTTATGATCATCAAATTAAATTGCCTTCATTTTAACTAA 1059 49.86 MTPLFSPPKVASPLYKSYSLNYSSPSPSYSSLPRSVSCPPSASSLPDVDTVLKRKRPARIDVPTIVPSIGFGFGTFETPEVMEEEGEGYSVYCKRGRRRSAMEDRFSATVRIQGDSRQAFFGIFDGHGGAQVAEIAAKRMSENVIDQVTRRTESELEEAIKDGYLATDREVSEEGVSGGACSATALIRNGHLAVSNVGDCRAVLSRKGKAEALTSDHRACREDERNRIEKSGGYVDCCRGAWRVQGTLAVSRAIGDKHLKQWVISEPETRVVKIEDDCDYLILASDGLWDKITNQEAVDVVEAACGVEIMENKKPNPLLMSACKQLAALSASRGSVDDTTVMIIKLNCLHFN 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5923487 5924876 - Carg00211-RA Car04g01034 146459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01034 352 Pfam Protein phosphatase 2C 94 338 IPR001932 -
Car04g01034 352 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
Car04g01034 352 MobiDBLite consensus disorder prediction 23 44 - -
Car04g01034 352 MobiDBLite consensus disorder prediction 23 45 - -
Car04g01034 352 ProSiteProfiles PPM-type phosphatase domain profile. 88 346 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01034 Car-Chr4:5923487 Car12g00030 Car-Chr12:149128 7.82E-72 dispersed
Car15g00023 Car-Chr15:232537 Car04g01034 Car-Chr4:5923487 6.42E-84 transposed
Car13g00028 Car-Chr13:259015 Car04g01034 Car-Chr4:5923487 6.31E-120 wgd
Car04g00139 Car-Chr4:749146 Car04g01034 Car-Chr4:5923487 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01034 K17506 - csv:101208170 491.886