Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01038 ATGTGCAGTGGCTCAAAGAATAAAGTTGCTTTCTCGAATTCCGCCATGGAATCTAAGTTTCAGAAGCTTAGAGATGGAGCTTTATTCTCTGCGAATTCGATCTTGCTTGAACTATCAGCCTCTGATGATGTAGATGGGTTCAAGAGAGAGGTGGAAGAAAAGGATTTGGATGTTGATGAACCAAGCTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCACTTATGATCGCTGCTATGTATGGAAGCTCTAAGGTTGTCAAATACTTAATTGAGACAGGCAAGGTTGATATCAACAGGGCTTGTGGATCAGATATGACCACTGCCCTTCACTGTGCCTCTGCTGGTGGCTCTGGTTCTTCCCTTGAAACCATCAAGCTCTTGCTCGACGGATCGGCTGACGTCAATTGCGTCGATGCGAACGGGAGAAAACCTGTTGATTTGATTGTTTCAGCTTGCAGGATGGTGTGTTATTCAGGAAGGAAAGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGTAGGTGATCTGAGCCTTTTCCTAGAAGAAGACCAGCAGAAGATCTCAGCTTCCCTGTCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCTGTTGATATATCGCTGCCCGACATCAACAGCGGGATATATGGCACTGATGATTTCAGGATGTATACTTTCAAAGTGAAACCTTGTTCGAGGGCGTATTCGCACGATTGGACCGAGTGTCCTTTCGTTCATCCTGGCGAGAATGCTAGGCGTAGAGACCCCAAGAAGTACCCTTATAGTTGCGTCCCGTGCCCTGAATTCCGAAAGGGGGCTTGTCCTAAGGGAGATTCCTGTGAGTATGCACATGGTGTCTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGCAAGGATGAGACTGGCTGCACAAGGAAGGTCTGCTTCTTTGCTCACAGACCTGATGAGTTGCGCCCTGTATATGCATCGACAGGCTCAGGCATGCCTTCGCCTAGGTCTCTTTCAAGCAGTGCTGCAGATATGTCTACCATGAGCCCGTTGGCTCTTGGTTCATCGTCGTTGTCGTTGCCGACTGCTTCAACGCCTCCCATGTCTCCCTTAGCATCGGTGTCTTCCCCTAAAAATGGTAACTTGTGGCAGAACAAGATTAACCTTACTCCTCCTGCTCTTCAGCTCCCTGGTAGTCGGTTGAAGGCGACCTTGAGTGCAAGAGATTTGGATTTAGAGATGGAATTGCTTGGATTAGAAAAGAACGTGAGCCAAATGCAACATCAACAACAGTTGATCGACGAGATATCCCGGCTCTCCGCTCCTTCTTACTGGAGTGCAGACATAAGCAGGAGCGCAGAGTTGAAGCCATCAAACCTTGATGACATGTTTGGATCATTAGATTCTTCCTTGTTGTCTCAGTTGCAGGGCACGTCGCTGAAAACGCCAATCTCGGCTCAAGTTCAATCTCCAACCGGGCTGCAGATGCGCCAAAACATGAACCAACTCCGTGCGAGTTACCCAGCTAACTTATCATCCTCACCTGTAAAGAAACCCTCTTCATTTGGCTTTGATTCATCAAGTGCAGTGGCAGCTGCTGTGATGAACTCAAGGTCTGCAGCCTTTGCAAAACGAAGCCAGAGTTTCATTGATCGAGCTGCAGTGACCCGCCATCCTGGGCTTACTGGAGCTGCAAATTCTGCAGCTACAATGTCTTCCCATCTCTCAGATTGGAACTCGCCCGATGGCAAACTAGACTGGGGAATGCAGGGCAACGATCTCAACAAACTCAAGAAATCTGCCTCGTTCGGGATCCGAAACAACAGCATGGGAACCCCCACGTTCGCTTCACCAGTAGAGGAGCCTGATGTCTCTTGGGTTAACTCCTTGGTGAAAGATGTTCCCTCGGACAGGTTCGGAATGTTCGGTGCAGAGAAACGAGCATACAACCTCAAAAGAGACATCAACGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTACGCAGAGCAGGAGCAGACAGTGGCATAA 2061 48.67 MCSGSKNKVAFSNSAMESKFQKLRDGALFSANSILLELSASDDVDGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMYGSSKVVKYLIETGKVDINRACGSDMTTALHCASAGGSGSSLETIKLLLDGSADVNCVDANGRKPVDLIVSACRMVCYSGRKAMEMLLRGDGMAGVGDLSLFLEEDQQKISASLSAKEGSDKKEYPVDISLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHRPDELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALGSSSLSLPTASTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKATLSARDLDLEMELLGLEKNVSQMQHQQQLIDEISRLSAPSYWSADISRSAELKPSNLDDMFGSLDSSLLSQLQGTSLKTPISAQVQSPTGLQMRQNMNQLRASYPANLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVTRHPGLTGAANSAATMSSHLSDWNSPDGKLDWGMQGNDLNKLKKSASFGIRNNSMGTPTFASPVEEPDVSWVNSLVKDVPSDRFGMFGAEKRAYNLKRDINEMLPSWMEQQLYAEQEQTVA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5949558 5951618 - Carg00215-RA Car04g01038 146463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01038 686 SUPERFAMILY Ankyrin repeat 68 159 IPR036770 -
Car04g01038 686 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Car04g01038 686 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 23 684 - -
Car04g01038 686 Gene3D - 271 333 - -
Car04g01038 686 MobiDBLite consensus disorder prediction 334 355 - -
Car04g01038 686 MobiDBLite consensus disorder prediction 340 355 - -
Car04g01038 686 Gene3D - 31 172 IPR036770 -
Car04g01038 686 Pfam Ankyrin repeats (3 copies) 75 145 IPR002110 GO:0005515
Car04g01038 686 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Car04g01038 686 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Car04g01038 686 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Car04g01038 686 PANTHER UNKEMPT FAMILY MEMBER 23 684 IPR045234 -
Car04g01038 686 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Car04g01038 686 SMART ANK_2a 112 144 IPR002110 GO:0005515
Car04g01038 686 SMART ANK_2a 77 107 IPR002110 GO:0005515
Car04g01038 686 ProSiteProfiles Ankyrin repeat region circular profile. 77 101 - -
Car04g01038 686 ProSiteProfiles Ankyrin repeat profile. 77 101 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01038 Car-Chr4:5949558 Car14g00415 Car-Chr14:2109824 3.89E-163 dispersed
Car16g00191 Car-Chr16:1093027 Car04g01038 Car-Chr4:5949558 4.34E-51 transposed
Car02g00534 Car-Chr2:4159493 Car04g01038 Car-Chr4:5949558 0 wgd
Car20g00300 Car-Chr20:1736664 Car04g01038 Car-Chr4:5949558 0 wgd
Car04g00144 Car-Chr4:787657 Car04g01038 Car-Chr4:5949558 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3324 PF12796 Ank_2 3.80E-10 CL0465 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01038 - - csv:101203102 1172.53