Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01042 ATGACGAAATTACCCTCTCCGACCGTCGCCGCCGTCTTCACCCTCATCGCCGTTGTTTTCCCGCTGTTCCCGGCGATTCAAGCTCTCGGTTCAGCCTCCACCCTTGCCGTCAGTTACGGCTCGAGAACTGTTTGTGGCATCGTCGCCGAGCAGCTGACCCAAAGGATTTTGTGCTTCCGTGACGGTCAAACTATTTTTGTTGAACCTCATTTCTCCTTTTCTGCCGTCTCCGGCGGTCGGAATATCTTCTGCGGTTTAAGGTCTAGCGGCGACATCCTCATTTGCTGGGAGTTCGACTCAACTACCGCTGCGTTTCCCTGGAGAAGAATCTATAACAATACCTCCATTTTTCTCGAGAATCTCGCGGTCGGCGACGATCAAATCTGTGCCACGGCTGTCGGCGCCGGCAATGTAACTTGCTGGCGAGAAGGTAACAAAGCTAAAGTTGGATTTTCTTCTCTTCAATTCGATTCAATCTCTTCTGGGTATGGATTTTCTTGCGGAATTTTAAAGGGTAATCAATTCGTAAGATGTTGGGGTCGAAATTCGTCGATTGCAAACGTAATCGAAAATGGGTTTAGAAATATTTCAATGGCGACCATCGTCGCCGGCGGGTATCATGCTTGTGGATTGAATATCTCTGGTGGGTTGGTTTGTAAAGGGAACAACGAATTTGGGCAGCTGGATTTTCCTTCAAGTTTATCTATGGAGTTCTCTGAATTGGCACTCGGTGAACGCCATAGCTGTGGGGTTTTGGTCTCGAATCGATCGGTGGTCTGTTGGAGTGGTGATTTGAGATTCTCTGTTGATTCAATTCGAGAAACTTCTTTTGAGTTAATTTCTTCTGGATCGGATTTTGTTTGTGGTTTAACGACAAGCAATTTCTCTGTTCTTTGTTGGGGGCCTGGTTGGTCCAATGATTCTTCACTTTCTCTTCCTAAGATTCTTCCTGGTCCTTGTGTTCAATCTTCTTGTAGTGATTGTGGGGTTTATCCTCTGTCTCAAACGCTCTGTTCCGGTTCTGGGAATGTCTGTGGTCGCTGTTTGTTTAATGTTTCAACGCCGCTGCCATCGCCTCCACCGCCGCCGCCAACGGTGGCGGCCCCATCACCTCCTTCGGCGGGTTTGAAAAGGGGTTTGTTGGCATTTGCTATTGTGGGCTCTGTTGGGGCATTTGCTGGGATTTGTACTGTTCTTTACTGTTTATGGACTGGTGTTTGTTTTAAGCACAAGAAGATACATAACTCTGTTCAGCCCACCATCACTAGAGCTGCTAGCTCGACAACATCGAACACGAACAACAGCCCGGTGTCGAGGTCATCAACAATTCGGCGACAGGGGTCCCGGATAATGCGGAGACAGAGGAGTGGGACATCGTCGAAGCACGCGGATAAAGCAGAAGAATTCACTCTATCTGAGCTTGCTAAGGCTACCAATGAGTTTTCCCCCGATAACAAGATTGGGCAGGGAAGCTTCGGCGTGGTGTACCGAGGGAAACTGTTCGACGGTCGGGACGTTGCGATAAAGAGAGGCGAAACGGGGTCGAAAACTAAGAAGTTTCAGGAGAAGGAGAGTGCTTTTGATTCAGAAGTGGCATTCTTGTCTAGGCTTCATCACAAGCATTTGGTTAGGCTTGTTGGGTATTGTGAGGAGAAAGATGAACGGCTGTTGGTTTATGAGTATATGAAAAATGGTGCACTTTACAATCATGTTCATGACAAGAACAACACTGATAAAGGGAGCAGTGTTATAAACTCTTGGAAAATGAGGATCAAAATTGGTTTAGATGCAGCTAGAGGTATTGAATATCTTCATAACTATGCAGTACCTCCCATAATCCATAGAGATATCAAATCATCCAACATTCTCCTCGACTCGAATTGGACAGCAAGAGTGTCGGATTTCGGGTTGTCGTTAATGAGTCCAGGGTCAGGCTGTGACTACCAACCAACCAAGGCAGCTGGGACGGTCGGTTACATTGATCCTGAATACTATGGACTCAACGTTTTGACTGCTAAGAGTGATGTGTATGGGCTTGGTGTGGTGTTGTTGGAGCTTTTGACAGGGAAGAGAGCTATATTCAAAGACGATGAACAGGGCGGGACACCGGTGAGCGTGGTCGATTATGCAGTGCCTGTCATTATGGTTGGAGAACTGGAGAAGATTTTGGATCGGAGAGTCGGGCCACCGCATATCAACGAAGCAGAGGCTGTGGAGCTGGTGGCTTACACAGCGATGCACTGCGTGCATTTGGAAGGGAAAGATCGGCCAACGATGACCGACGTTGTCGCTAATTTGGAACGAGCTTTAAATCTCTGTGATGATAGCCCTGGTAGCATCTCTAGTGGTGGAATTTCCATTGTTTCAGAGTGA 2373 47.58 MTKLPSPTVAAVFTLIAVVFPLFPAIQALGSASTLAVSYGSRTVCGIVAEQLTQRILCFRDGQTIFVEPHFSFSAVSGGRNIFCGLRSSGDILICWEFDSTTAAFPWRRIYNNTSIFLENLAVGDDQICATAVGAGNVTCWREGNKAKVGFSSLQFDSISSGYGFSCGILKGNQFVRCWGRNSSIANVIENGFRNISMATIVAGGYHACGLNISGGLVCKGNNEFGQLDFPSSLSMEFSELALGERHSCGVLVSNRSVVCWSGDLRFSVDSIRETSFELISSGSDFVCGLTTSNFSVLCWGPGWSNDSSLSLPKILPGPCVQSSCSDCGVYPLSQTLCSGSGNVCGRCLFNVSTPLPSPPPPPPTVAAPSPPSAGLKRGLLAFAIVGSVGAFAGICTVLYCLWTGVCFKHKKIHNSVQPTITRAASSTTSNTNNSPVSRSSTIRRQGSRIMRRQRSGTSSKHADKAEEFTLSELAKATNEFSPDNKIGQGSFGVVYRGKLFDGRDVAIKRGETGSKTKKFQEKESAFDSEVAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYNHVHDKNNTDKGSSVINSWKMRIKIGLDAARGIEYLHNYAVPPIIHRDIKSSNILLDSNWTARVSDFGLSLMSPGSGCDYQPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDDEQGGTPVSVVDYAVPVIMVGELEKILDRRVGPPHINEAEAVELVAYTAMHCVHLEGKDRPTMTDVVANLERALNLCDDSPGSISSGGISIVSE 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5982640 5985012 + Carg00219-RA Car04g01042 146467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01042 790 Pfam Protein kinase domain 484 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01042 790 Pfam Regulator of chromosome condensation (RCC1) repeat 200 227 - -
Car04g01042 790 MobiDBLite consensus disorder prediction 423 445 - -
Car04g01042 790 ProSiteProfiles Protein kinase domain profile. 481 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01042 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Car04g01042 790 ProSitePatterns Protein kinases ATP-binding region signature. 487 509 IPR017441 GO:0005524
Car04g01042 790 MobiDBLite consensus disorder prediction 423 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01042 Car-Chr4:5982640 Car09g01094 Car-Chr9:11105458 3.76E-136 dispersed
Car13g00036 Car-Chr13:314538 Car04g01042 Car-Chr4:5982640 2.00E-19 wgd
Car04g00148 Car-Chr4:814857 Car04g01042 Car-Chr4:5982640 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88798 PF00069 Pkinase 1.00E-43 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01042 - - bhj:120081574 1310.05