Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01051 ATGGCTTCCGTATATCGTGATCGGACGTCGGAGTTTCGGTCACTGTCGGAGACGCTGAAGAAGATCGGCGGAGCCACAGCCGCCGTCAATTTAGCTCAAAATGAACCATCGGTGTCCACGCCCTCCAGAACGCCGGCTATTTTACGATCGGAATTCAGCAAGAAGGCCTCGCGTATTGGATTGGGAATCCAAGAAACCTCTCAGAAGATTGTGAGGCTTGCTCAGTTGGCAAAAAGATCATCAATGTTTGATGACCCAATCAGGGAAATTCAGGAAATGACTGCTTTGATTAAGAATGATATTACCTCCTTGAATGTAGCTATCACAGATTTGCAAACAATCCAGAACATGGAGATAGCAGAGGGGAATTATTCAGAGGATAGAGTTGTTCATTCAACAGCTGTCTGTGATGACCTGAAGAGCAGACTTATGGGAGCTACAAAACGGCTTCAAGATGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGACAAATATTTTCTGCAAATGCAACCAGAGAAAGTCCTTTTCAAAATCAAGCCAAAACTGTAACGCAACCTCCACCTTGGTCAAGTAACACATCTGGAGGTGCCCAATCATCTTTATTATCATCAAATGGAGCTCAAGCTGGGGGTCAATTGAGACGAAGGTTAGCTGTTGAGAACACCCCATCACAGCAAATGGAGTTGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCCCAAAGTCGTGCCGTTGCTCTCCATAATGTGGAATCCACCATTTCAGAACTCAGTGGAATTTTTACACATCTTGCCACCATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGATGAATCATTGGCAAACGTAGAAGGTGCTCGGAGTGCTCTTTTAAGGCATCTTAACCAGATATCATCAAATAGATGGCTTCTTATAAAACTATTTGCCATTTTGATAATCTTCTTGATGCTCTTTATTTTCTTGGCATAA 1011 43.32 MASVYRDRTSEFRSLSETLKKIGGATAAVNLAQNEPSVSTPSRTPAILRSEFSKKASRIGLGIQETSQKIVRLAQLAKRSSMFDDPIREIQEMTALIKNDITSLNVAITDLQTIQNMEIAEGNYSEDRVVHSTAVCDDLKSRLMGATKRLQDVLTTRTENIKANESRRQIFSANATRESPFQNQAKTVTQPPPWSSNTSGGAQSSLLSSNGAQAGGQLRRRLAVENTPSQQMELSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGARSALLRHLNQISSNRWLLIKLFAILIIFLMLFIFLA 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6024702 6027872 - Carg00228-RA Car04g01051 146476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01051 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Car04g01051 336 Pfam SNARE domain 282 333 IPR000727 -
Car04g01051 336 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car04g01051 336 MobiDBLite consensus disorder prediction 173 212 - -
Car04g01051 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01051 Car-Chr4:6024702 Car12g00284 Car-Chr12:1869253 1.94E-95 dispersed
Car04g00154 Car-Chr4:847175 Car04g01051 Car-Chr4:6024702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01051 K08490 - csv:101213786 553.903