Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01075 ATGGCTAATCGATGGTGGGCTGAAAACATACCCACCACCACGGACAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCATAGAAGCTGTCGATGAAGAGAATAACTCCGGCAGCCATGAGAGAGCCGAACCAGGCACCAGCTCCAGCACGCGCCGTCCACGTGGTCGGCCACCGGGATCCAAAAACAAGCCGAAGCCGCCAGTGGTGGTCACGAAAGAGAGCCCCGATGCTCTCCGGAGCCACGTTTTAGAAATCGGCAGCGGCAGCGATATCGTCGAAAGCATCTCAAACTTCGCCCAACGCCGTCAGCGAGGAGTTTCGGTTCTCAGTGGAAATGGGGTCGTCGCGAATGTCACTCTCCGGCATCCGGCAGCCCCTAGCGGTGTTATTACGCTACAGGGACGATTCGACATACTGTCGCTCTCTGGTGCATTTTTGCCTGCCCCAGCTCCACCGGGAGCTACTGGGTTAACTGTCTACTTGGCTGGCGGGCAGGGGCAAGTTGTTGGTGGCATTGTTGTCGGTGCCCTCGTTGCAACAGGTCCAGTCATCGTTATCGCTGCCACTTTCACCAACGCTACATTCGAACGGCTGCCACTCGAGGAGGAGGAGGCAGCTGCTGGAGACAAGTCTGGAACAAGCCAGAACAATTCAACTTCTCAGAGCATGGGGGATCAACAGCAGCCTTCAATGGGCGTTTACAATATGGCTTCAAATTTGGTGCCAAATGGTCAGGTTTCTTCACATGATGTGTTCTGGAGTCCTCCTAGAGCCCCACCTCCATTTTAA 798 54.89 MANRWWAENIPTTTDSSTSNPYSTPLKQSIEAVDEENNSGSHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPSGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEEEEAAAGDKSGTSQNNSTSQSMGDQQQPSMGVYNMASNLVPNGQVSSHDVFWSPPRAPPPF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6193419 6194216 + Carg00252-RA Car04g01075 146500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01075 265 MobiDBLite consensus disorder prediction 1 35 - -
Car04g01075 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 264 IPR014476 GO:0003680
Car04g01075 265 MobiDBLite consensus disorder prediction 205 265 - -
Car04g01075 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Car04g01075 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Car04g01075 265 MobiDBLite consensus disorder prediction 1 78 - -
Car04g01075 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 264 - -
Car04g01075 265 MobiDBLite consensus disorder prediction 212 253 - -
Car04g01075 265 MobiDBLite consensus disorder prediction 43 58 - -
Car04g01075 265 PIRSF ESCAROLA 7 263 IPR014476 GO:0003680
Car04g01075 265 Gene3D - 81 210 - -
Car04g01075 265 CDD DUF296 82 165 IPR005175 -
Car04g01075 265 ProSiteProfiles PPC domain profile profile. 78 214 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01075 Car15g00111 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01075 Car-Chr4:6193419 Car06g01150 Car-Chr6:8516857 6.84E-73 dispersed
Car10g00305 Car-Chr10:1501563 Car04g01075 Car-Chr4:6193419 3.25E-66 dispersed
Car12g01114 Car-Chr12:10848560 Car04g01075 Car-Chr4:6193419 1.30E-78 dispersed
Car15g00111 Car-Chr15:651206 Car04g01075 Car-Chr4:6193419 4.70E-73 wgd
Car04g00182 Car-Chr4:1007855 Car04g01075 Car-Chr4:6193419 3.13E-169 wgd
Car04g01075 Car-Chr4:6193419 Car04g02832 Car-Chr4:21551383 3.88E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01075 - - csv:101217530 385.956