Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01076 ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTGCGCAGCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGAAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCCTTGGGTTCTGCCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA 657 45.81 MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLCLGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6196966 6197695 - Carg00253-RA Car04g01076 146501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01076 218 Pfam Lateral organ boundaries (LOB) domain 20 116 IPR004883 -
Car04g01076 218 Coils Coil 100 120 - -
Car04g01076 218 MobiDBLite consensus disorder prediction 1 21 - -
Car04g01076 218 ProSiteProfiles LOB domain profile. 19 121 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01076 Car-Chr4:6196966 Car08g00835 Car-Chr8:5589206 1.98E-44 dispersed
Car04g00183 Car-Chr4:1010728 Car04g01076 Car-Chr4:6196966 7.30E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3327 PF03195 LOB 4.10E-32 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01076 K13945 - csv:101204875 295.819