Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01084 ATGCCTGCCCTTGCGTTTACTCTTCCTGCTCTTCTCCTCTCCCTCCTCTCTCTCGGAGCTTCTTACTCCGACGGCCAGTGGCAGAATGCTCATGCTACTTTTTACGGCGAAAGTGACGGCTCTGGAACTATGGGAGGTGCTTGCGGTTATGGAAACTTGTTCGACGATGGCTACGGTGTGAACACGGCGGCGCTGAGCACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCTTGTTTCGAGATTAAGTGCGTTGACGATCCACAGTGGTGCCATCCCGGGAATCCGTCAATTATCATAACGGCCACGAACTTTTGCCCTCCGAACTTCGCGATTCCGAGCGACAATGGAGGGTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCTCCATGCCAATGTTCCTCAAGCTCGCCCAGTACAAAGCCGGAATTATTCCCGTCACTTATCGCAGGGTGGGTTGCGTGAAAAAAGGAGGAATAAGATTCAGTATGAACGGCTTCCAGTACTTCAACTTGGTGCTCATCTCAAACGTGGGAGGGGCAGGGGACGTGGTGGAGGTGAGCGTGAAAGGCAGCAGCAACACCAAATGGATGAGCATGAGACGGAACTGGGGCCAGAACTGGCAACCCGACACCGTCTTGGTTGGTCAGTCGCTGTCCTTCAGAGTCACAACCAGCGACCGTCGCACCGTCACCTCCTGGAACGTCGTCCCCTCTAATTGGCAGTTTGGGCAGACGTTCTCCGGTGACAATTTCAGCGTCTAA 765 54.51 MPALAFTLPALLLSLLSLGASYSDGQWQNAHATFYGESDGSGTMGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITATNFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRVGCVKKGGIRFSMNGFQYFNLVLISNVGGAGDVVEVSVKGSSNTKWMSMRRNWGQNWQPDTVLVGQSLSFRVTTSDRRTVTSWNVVPSNWQFGQTFSGDNFSV 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6245571 6247037 + Carg00261-RA Car04g01084 146509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01084 254 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Car04g01084 254 Gene3D - 159 252 IPR036749 -
Car04g01084 254 Pfam Expansin C-terminal domain 160 238 IPR007117 -
Car04g01084 254 Pfam Lytic transglycolase 62 149 IPR009009 -
Car04g01084 254 PANTHER EXPANSIN-A4 17 253 - -
Car04g01084 254 Gene3D - 16 154 IPR036908 -
Car04g01084 254 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Car04g01084 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Car04g01084 254 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Car04g01084 254 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Car04g01084 254 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Car04g01084 254 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Car04g01084 254 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Car04g01084 254 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Car04g01084 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Car04g01084 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Car04g01084 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Car04g01084 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 249 IPR007117 -
Car04g01084 254 PANTHER EXPANSIN-A15 17 253 IPR002963 GO:0009664
Car04g01084 254 SMART dpbb_1 62 149 IPR007112 -
Car04g01084 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Car04g01084 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Car04g01084 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Car04g01084 254 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Car04g01084 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Car04g01084 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01084 Car04g02553 CCT
Car04g01084 Car04g02553 ECH
Car04g02553 Car04g01084 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01084 Car-Chr4:6245571 Car13g00092 Car-Chr13:680431 2.94E-141 dispersed
Car14g00996 Car-Chr14:7797640 Car04g01084 Car-Chr4:6245571 1.20E-97 dispersed
Car01g00552 Car-Chr1:3258039 Car04g01084 Car-Chr4:6245571 3.88E-140 wgd
Car02g00576 Car-Chr2:4394601 Car04g01084 Car-Chr4:6245571 2.78E-141 wgd
Car20g00342 Car-Chr20:1954549 Car04g01084 Car-Chr4:6245571 7.86E-139 wgd
Car03g00371 Car-Chr3:4536607 Car04g01084 Car-Chr4:6245571 6.13E-142 wgd
Car04g00193 Car-Chr4:1056885 Car04g01084 Car-Chr4:6245571 1.40E-146 wgd
Car04g01084 Car-Chr4:6245571 Car07g00978 Car-Chr7:5558020 2.91E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01084 - - csv:101218950 412.92