Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01093 ATGGCAGATTCTGAGGACATTCAGCCTCTCGTATGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGCCGTCCTCGCCATACAGGGGTGATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGTATTGTTAGCAATTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCACCCAGTTCTCCTAACCGAGGCTCCTCTTAACCCGAAGGCCAATCGTGAGAAGATGACTCAAATCATGTTTGAGACTTTCAATACTCCGGCCATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGATGGACTCTGGTGACGGTGTCAGTCATACTGTCCCTATATACGAAGGGTATGCCCTCCCACACGCCATCCTTCGTCTTGACCTTGCAGGCCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCCTTCACCACAACTGCAGAGCGGGAAATTGTGAGAGATATGAAAGAAAAGCTTTCGTATATTGCCCTTGACTATGAACAGGAGATGGAGACATCCAAGACCAGCTCATCGGTCGAAAAGAGCTATGAACTGCCTGATGGACAGGTGATCACTATCGGCGCAGAGAGATTCAGATGTCCCGAAGTTCTTTTCCAACCCTCCATGATCGGGATGGAAGCAGCAGGCATTCATGAGACTACATACAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCCACCATGTTCACGGGCATTGCAGATAGAATGAGCAAGGAAATCTCCGCCCTTGCCCCTAGCAGCATGAAAATAAAGGTGGTGGCGCCACCGGAGAGGAAGTACAGTGTCTGGATTGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAGGCAGAGTACGATGAATCCGGACCGTCGATTGTGCACAGGAAATGCTTCTAA 1134 48.06 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6303981 6305584 + Carg00270-RA Car04g01093 146518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01093 377 Gene3D - 10 371 - -
Car04g01093 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Car04g01093 377 PRINTS Actin signature 28 37 IPR004000 -
Car04g01093 377 PRINTS Actin signature 51 62 IPR004000 -
Car04g01093 377 PRINTS Actin signature 63 85 IPR004000 -
Car04g01093 377 PRINTS Actin signature 117 130 IPR004000 -
Car04g01093 377 PRINTS Actin signature 142 161 IPR004000 -
Car04g01093 377 PRINTS Actin signature 238 254 IPR004000 -
Car04g01093 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Car04g01093 377 PANTHER ACTIN 1 376 IPR004000 -
Car04g01093 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Car04g01093 377 SMART actin_3 7 377 IPR004000 -
Car04g01093 377 Gene3D - 140 340 - -
Car04g01093 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Car04g01093 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Car04g01093 377 Pfam Actin 5 377 IPR004000 -
Car04g01093 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Car04g01093 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Car04g01093 377 PANTHER ACTIN-97 1 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01093 K10355 ACTF; actin, other eukaryote - csv:101220611 746.117
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01093 Car15g00367 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01093 Car-Chr4:6303981 Car15g00367 Car-Chr15:1924229 0 dispersed
Car04g00202 Car-Chr4:1112923 Car04g01093 Car-Chr4:6303981 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g295 Blo04g00108 . . . . . . . Cmo04g00222 Cmo04g01263 Cma04g01189 Cma04g00220 Car04g01093 . . . Cpe01g00187 . . . . . . . Cla07g00303 Cam07g0320 Cec07g0364 Cco07g0325 Clacu07g0312 Cmu07g0369 Cre07g0679 . . . . Lsi03g00412 . Chy10g00547 Cme10g00888 . . . Bda15g00357 . . . . . . Cmo15g00397 . Cma15g00386 . Car15g00367 Cpe01g01096 . . . . . . . . . . . . . . . Lsi04g00880 Csa05g00706 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00582 CST 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.0e-215 743.4
Car07g00972 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.7e-214 740.0
Car14g00382 CST 1 377 Cytoskeleton Gene Families AT2G37620 96.3 1.3e-213 739.2
Car02g00437 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.9e-213 738.0
Car03g00968 CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.9e-213 738.0
Car07g00770 CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.9e-213 738.0
Car20g00933 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.9e-213 738.0
Car06g00084 CST 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.8e-213 737.6
Car04g02545 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 5.0e-213 737.3
Car15g00367 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.5e-212 734.9
Car19g00231 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.5e-212 734.9
Car20g00354 CST 1 377 Cytoskeleton Gene Families AT2G37620 95.2 2.5e-212 734.9
Car04g01093 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.2e-212 734.2
Car11g01209 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 4.2e-212 734.2
Car03g00375 . 1 372 Cytoskeleton Gene Families AT2G37620 96.0 8.8e-210 726.5
Car04g00202 . 1 396 Cytoskeleton Gene Families AT2G37620 90.9 1.3e-208 722.6
Car04g02545 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 1.5e-214 742.3
Car15g00367 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.8 7.7e-214 740.0
Car04g01093 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.3e-213 739.2
Car06g00084 CST 1 377 Cytoskeleton Gene Families AT5G59370 96.6 3.8e-213 737.6
Car14g00382 CST 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.4e-212 735.7
Car02g00582 CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 3.2e-212 734.6
Car20g00354 CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 7.2e-212 733.4
Car07g00972 . 1 377 Cytoskeleton Gene Families AT5G59370 95.8 3.6e-211 731.1
Car11g01209 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 1.0e-210 729.6
Car19g00231 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.0e-210 729.6
Car02g00437 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.9e-210 727.6
Car03g00968 CST 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.9e-210 727.6
Car07g00770 CST 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.9e-210 727.6
Car20g00933 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.9e-210 727.6
Car04g00202 . 1 396 Cytoskeleton Gene Families AT5G59370 91.2 5.7e-209 723.8
Car03g00375 . 1 372 Cytoskeleton Gene Families AT5G59370 95.7 2.2e-208 721.8
Car04g02545 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 7.0e-215 743.4
Car15g00367 CCT 1 377 Cytoskeleton Gene Families AT3G46520 97.1 3.5e-214 741.1
Car04g01093 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.8 5.9e-214 740.3
Car06g00084 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.7e-213 738.8
Car14g00382 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.6 6.5e-213 736.9
Car02g00582 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 1.4e-212 735.7
Car20g00354 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 3.2e-212 734.6
Car07g00972 . 1 377 Cytoskeleton Gene Families AT3G46520 96.0 1.6e-211 732.3
Car11g01209 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 4.7e-211 730.7
Car19g00231 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 4.7e-211 730.7
Car02g00437 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.8e-210 728.8
Car03g00968 CST 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.8e-210 728.8
Car07g00770 CST 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.8e-210 728.8
Car20g00933 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.8e-210 728.8
Car04g00202 . 1 396 Cytoskeleton Gene Families AT3G46520 91.4 2.6e-209 724.9
Car03g00375 . 1 372 Cytoskeleton Gene Families AT3G46520 95.4 6.3e-208 720.3
Car02g00582 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.8 4.1e-215 744.2
Car06g00084 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.8 2.6e-214 741.5
Car07g00972 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 5.9e-214 740.3
Car04g02545 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 7.7e-214 740.0
Car20g00354 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.3 7.7e-214 740.0
Car14g00382 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.0e-213 739.6
Car04g01093 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.7e-213 738.8
Car15g00367 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.0 3.8e-213 737.6
Car02g00437 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.1e-212 736.1
Car03g00968 CST 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.1e-212 736.1
Car07g00770 CST 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.1e-212 736.1
Car20g00933 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.1e-212 736.1
Car19g00231 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 3.2e-212 734.6
Car11g01209 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 7.2e-212 733.4
Car04g00202 . 1 396 Cytoskeleton Gene Families AT3G12110 92.2 1.0e-210 729.6
Car03g00375 . 1 372 Cytoskeleton Gene Families AT3G12110 95.7 1.1e-209 726.1
Car02g00437 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.7e-209 723.8
Car03g00968 CST 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.7e-209 723.8
Car07g00770 CST 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.7e-209 723.8
Car20g00933 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.7e-209 723.8
Car04g01093 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.6
Car15g00367 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.6
Car04g02545 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 3.7e-208 721.1
Car02g00582 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.8 4.8e-208 720.7
Car06g00084 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.8 6.3e-208 720.3
Car14g00382 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.8 6.3e-208 720.3
Car11g01209 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.4e-207 719.2
Car19g00231 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.4e-207 719.2
Car07g00972 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 9.1e-207 716.5
Car20g00354 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.2 2.6e-206 714.9
Car04g00202 . 1 396 Cytoskeleton Gene Families AT3G18780 87.1 5.5e-204 707.2
Car03g00375 . 1 372 Cytoskeleton Gene Families AT3G18780 91.1 3.6e-203 704.5
Car02g00437 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.0e-209 725.3
Car03g00968 CST 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.0e-209 725.3
Car07g00770 CST 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.0e-209 725.3
Car20g00933 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.0e-209 725.3
Car04g01093 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.4e-209 724.2
Car15g00367 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.4e-209 724.2
Car04g02545 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 1.3e-208 722.6
Car06g00084 CST 1 377 Cytoskeleton Gene Families AT1G49240 92.0 2.2e-208 721.8
Car14g00382 CST 1 377 Cytoskeleton Gene Families AT1G49240 92.0 2.2e-208 721.8
Car11g01209 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.8e-208 720.7
Car19g00231 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.8e-208 720.7
Car02g00582 CST 1 377 Cytoskeleton Gene Families AT1G49240 91.5 1.1e-207 719.5
Car07g00972 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 2.0e-206 715.3
Car20g00354 CST 1 377 Cytoskeleton Gene Families AT1G49240 91.0 5.9e-206 713.8
Car04g00202 . 1 396 Cytoskeleton Gene Families AT1G49240 87.4 1.9e-204 708.8
Car03g00375 . 1 372 Cytoskeleton Gene Families AT1G49240 90.9 8.0e-203 703.4
Car02g00437 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 9.7e-217 749.6
Car03g00968 CST 1 377 Cytoskeleton Gene Families AT5G09810 98.4 9.7e-217 749.6
Car07g00770 CST 1 377 Cytoskeleton Gene Families AT5G09810 98.4 9.7e-217 749.6
Car20g00933 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 9.7e-217 749.6
Car11g01209 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 5.3e-215 743.8
Car19g00231 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-214 741.1
Car02g00582 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.2 1.1e-212 736.1
Car04g02545 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.4e-212 735.7
Car20g00354 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.5 2.5e-212 734.9
Car06g00084 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.2e-212 734.6
Car14g00382 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.2e-212 734.6
Car15g00367 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.5 7.2e-212 733.4
Car07g00972 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 9.4e-212 733.0
Car04g01093 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.2 1.2e-211 732.6
Car03g00375 . 1 372 Cytoskeleton Gene Families AT5G09810 94.9 3.7e-208 721.1
Car04g00202 . 1 396 Cytoskeleton Gene Families AT5G09810 90.4 1.1e-207 719.5
Car17g00703 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT2G19760 76.3 2.7e-57 218.4
Car05g01289 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 3.0e-56 214.9
Car12g01245 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 3.0e-56 214.9
Car05g01288 . 1 129 Cytoskeleton Gene Families AT2G19760 76.0 3.9e-56 214.5
Car08g00630 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT2G19760 74.0 6.7e-56 213.8
Car14g01139 CCT,CST,ECH 1 129 Cytoskeleton Gene Families AT2G19760 72.9 1.4e-53 206.1
Car01g00075 CCT,CST,ECH 1 129 Cytoskeleton Gene Families AT2G19760 72.9 4.1e-53 204.5
Car17g00703 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 76.3 7.9e-57 216.9
Car05g01288 . 1 130 Cytoskeleton Gene Families AT4G29350 75.4 1.9e-55 212.2
Car08g00630 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 73.3 3.3e-55 211.5
Car12g01245 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 3.3e-55 211.5
Car05g01289 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 1.3e-54 209.5
Car14g01139 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 71.0 2.6e-52 201.8
Car01g00075 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 69.5 1.7e-51 199.1
Car12g01245 . 1 133 Cytoskeleton Gene Families AT4G29340 85.1 5.2e-64 240.7
Car05g01289 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 3.4e-63 238.0
Car08g00630 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.9 3.9e-59 224.6
Car17g00703 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.9 3.9e-59 224.6
Car05g01288 . 1 130 Cytoskeleton Gene Families AT4G29340 71.4 3.4e-55 211.5
Car01g00075 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 70.1 4.2e-53 204.5
Car14g01139 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 69.4 2.1e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01093 Car_Chr04 FPKM 101.186317 104.330238 0.268405 0.033962 15.453407 16.660179 14.173744 4.393367 5.776936 6.254814