Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01102 ATGGTATACAGTATCAGGCTCGATTTCCCGTACGAATTTTACCAGAACGTACATAAGCCTTATGAAATGGAGAGCCATTCGGTTCTGCTGTACACGTGTACGGTAGATTACAAGATTGTAAAGTTATATAGTAGAACCGCGTCGTATAGGATCATTCGCTATAGTAAAAATACCAAAGCTCAGATTCTGTCGCTATCCAGTAGTCCCTCGGAAGTCCCTTTCTATTTCTTCTCACCCAGAGGAACATCGCGTGTTCCAACCTCCCCGGCAATTTCTCCGGCGAAGTCTTTCCAGCATAAAAGCTTTTGGATACCAAGGGATGCTGGATGTTTAACTGATGGAGAGATGAACTATGATAGCTCCTCCAGAATCGAAGCCAAACGTGGCCATCAATGGTTCATGGATGGCAGTGCACCAGAGCTATTCAGTAGCAAGAAGCAAGCAATAGAAACTGTAAATACTAGACCTGTTCCAGGAGTTCCACACATGAATGTTTCTCCCTGGGAAAACACTTCAAGTTTTCAGTCAGTTCCTGGGCATTTCACTGATCGTCTTTTCGGCTCTGAGCCAGTACGAACTGTCAACTTGGTCGATAGAGGCATCACTGTTGGAAATGCAAATATGGACATGGGAAGAAAGGAGTATGAGAATCATTTTGCAAACAACCCATCCGTTGGCTTGTCCATGTCCCAATCCATTGAGGATTCCTCATCATGCCTCAATTTTGGTGGAATTAGAAAAGTTAAAGTCAATCAAGTCAGGGATCCTGACATTGGCATGTCTGCCTCTTTGGGACATGCCTATAGTAGGGGTGATAATGGTACAATTTCAATGGGTGCAACATTTAACAAAAACCACGAGCATGCCATTTCATTGGGCCATACATATAACAGTCGAGATGAGAATGCCATCTCGGTTGGCCCTGCATATCACAAGACAGACGACAGTTTCATTTCCATGGGTCATGCTTTCAGCAAGGGTGATGAGAATTTCATTACAATTGGTCCTAACTATAGCAAGGGAGACAATAGCATCCTATCGATGAGCCAGCCTTTTGACAAAGGGGATGACTCTTTTATTTCAATGGGTCAATCTTACGAGAAGGCAGAAGGTAATATCATTTCTTTTGGTGCCTCCTACAATAAAGGGCATGAAAATTTTATCTCAATGGGGCCAACCTATAGTAAGGCAGGCGATACTTTCATTTCAATGGCGCCCTCCTATAATAAGGGAAATGATGATAACTTGTCCATGGGTCCAACCTTTGACAAGGTAAACTCGGACGTTGTACATGTCGGTCCTAAATTTGACAAAGCCGATTCTGGTTCGGTGTCAATGATTCACAACTATCATAAAGGTGAGATTAATACCATATCTTTTGGAGGCTTTGATGATGAGAATGGGACAGGTAATCCTTCTGGTGGGATCATTAGCAGTTATGACTTGTTAATGGCTAATCAGGCTTCTGCCCAAGCATCAGAAGTATCAACCATGAGAGATTCAGTTCATCCCAATGTAGAAGTGAACATTAACAATGCCATAAAAGTTGATGCTAAAATCGACACAAGTTCCAAGATTAGAGAGCCGAGGACGACTAAGAAGGTGTCACCCAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCAACTGGTATGCTTGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTGAAAGGAACAATAAAAGGAACTGGATACTTGTGCAGCTGTGACAACTGCAATCATTCAAAGGCTCTCAATGCTTATGAGTTTGAGAGGCACGCTGGCTGCAAAACCAAACATCCAAATAACCACATTTACTTTGAGAATGGTAAAACTATCTATGCTGTTGTTCAAGAGCTAAAGAACACCCCTCAGGAGATGTTATTTGATGCAATTCACAATGTGACTGGCTCTCCCATTAATCAGAAGAACTTTCGTATTTGGAAAGCATCTTATCAAGCTGCCACTCTTGAACTCCAGCGTATTTATGGAAAAGATGAAGTAACTATGCCTTCTTGA 2037 42.22 MVYSIRLDFPYEFYQNVHKPYEMESHSVLLYTCTVDYKIVKLYSRTASYRIIRYSKNTKAQILSLSSSPSEVPFYFFSPRGTSRVPTSPAISPAKSFQHKSFWIPRDAGCLTDGEMNYDSSSRIEAKRGHQWFMDGSAPELFSSKKQAIETVNTRPVPGVPHMNVSPWENTSSFQSVPGHFTDRLFGSEPVRTVNLVDRGITVGNANMDMGRKEYENHFANNPSVGLSMSQSIEDSSSCLNFGGIRKVKVNQVRDPDIGMSASLGHAYSRGDNGTISMGATFNKNHEHAISLGHTYNSRDENAISVGPAYHKTDDSFISMGHAFSKGDENFITIGPNYSKGDNSILSMSQPFDKGDDSFISMGQSYEKAEGNIISFGASYNKGHENFISMGPTYSKAGDTFISMAPSYNKGNDDNLSMGPTFDKVNSDVVHVGPKFDKADSGSVSMIHNYHKGEINTISFGGFDDENGTGNPSGGIISSYDLLMANQASAQASEVSTMRDSVHPNVEVNINNAIKVDAKIDTSSKIREPRTTKKVSPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGTIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIHNVTGSPINQKNFRIWKASYQAATLELQRIYGKDEVTMPS 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6347091 6351449 - Carg00279-RA Car04g01102 146527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01102 678 Pfam Tify domain binding domain 571 626 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01102 - - - csv:101206313 1092.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01102 Car-Chr4:6347091 Car14g00139 Car-Chr14:648141 3.05E-42 dispersed
Car02g00597 Car-Chr2:4517071 Car04g01102 Car-Chr4:6347091 6.25E-22 wgd
Car20g00370 Car-Chr20:2061582 Car04g01102 Car-Chr4:6347091 2.33E-39 wgd
Car04g00208 Car-Chr4:1159173 Car04g01102 Car-Chr4:6347091 0 wgd
Car04g01102 Car-Chr4:6347091 Car06g00270 Car-Chr6:1526693 3.55E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g255 . . . Bda15g00213 . . Bma03g00301 . Cmo04g00229 Cmo04g01272 Cma04g01200 Cma04g00226 Car04g01102 . . . Cpe01g00193 . . . . . . . Cla07g00294 Cam07g0311 Cec07g0355 Cco07g0316 Clacu07g0303 Cmu07g0360 Cre07g0670 Cone1ag1303 Cone5ag0283 . . Lsi03g00413 . Chy10g00556 Cme10g00876 Blo13g00755 Blo04g00288 . . Bpe04g01846 . . Bma08g00988 . . . . . . . Cpe01g01104 . . . . . . . . . . . . . . . Lsi04g00872 Csa05g00695 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g00139 CST 124 945 PHD Transcription Factor Family AT3G53680 53.3 5.1e-250 861.3
Car06g00270 CST 18 837 PHD Transcription Factor Family AT3G53680 53.5 1.1e-249 860.1
Car04g00208 . 464 590 PHD Transcription Factor Family AT3G53680 55.9 1.8e-37 155.2
Car20g00370 CST 306 444 PHD Transcription Factor Family AT3G53680 51.8 5.3e-37 153.7
Car04g01102 . 533 659 PHD Transcription Factor Family AT3G53680 54.3 2.0e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01102 Car_Chr04 FPKM 3.732733 5.166931 1.102646 1.046408 0.0 0.0 0.0 0.0 0.0 0.095734