Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01109 ATGGTGGGCTCTGAGGACTCTGGTACTTCTGGGGCCGCGGTGCAGCTCTCTGGCAATCGGAAATTGTTCTGGCGCTCGGCCTCGTGGTCTGCATCACGTTCCTCCCTTCACCATCCGGAAGTGAACAGAGAAGGTGGAGACCCCAATGGGAATCTTGGTGATAGCAGTGGACCAAGCCGAATTTTCCCTGCTCCATTAACTCCAAGGTCGCAGCAGCATTGCAAAGCGAGGTCGTGTTTGCCTCCTTTACAACCTTTGTCCATAGCTCGGCGAAGCTTAGATGAATGGCCGAAGGCGGGGTCGGATGATATTGGTGAGTGGCCACAGCCTCCTACACCAAGTGGCAGAGGAAATTGCGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAACCCGGATAAGAATTGTGGGCTGGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCAAAGGTGGCTGAACATGTATATCTTGGTGGTGATGCAGTTGCTCGAGATAGGGATATACTTAAACAGAATGCAATTACTCATGTGTTGAATTGTGTAGGTTTCGTTTGCCCTGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTGTGGTTGCAGGATAGCCCTTCTGAGGATATTACCAGTATACTTTATGATGTTTTTGACTACTTTGAAGATGTTAGAGAACAAAATGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCACGGTCGACGTCGTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTAAAGGCAGCAAGAGGTATTGCCGACCCCAATATGGGTTTTGCTTGCCAGTTATTACAATGCCAAAAGAGGGTCCACGCTTTCCCTCTTAGCCCAAGTTCACTGTTGAGGATGTATAGAGTTGCTCCACACTCGCCATATGATCCTTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCTACCTCATCTCTGGATTCTAGAGGTGCATTTATCGTTCATGTACCCTCTGCCATATTTGTTTGGATTGGTAAGAACTGTGAAGCAATCATGGAAAGAGATGCGAGGGGAGCTGTTGTGCAAATCGTTCGATATGAGAAGGTGCATGGGCCTATTTATGTAATTAAAGAAGGGGAAGAACCAACCAACTTTTGGGACTCTTTTGCAAACCTGTTACCTTTAATGGATAAATCTAACAGTAAAATTAATCTTGGGGAATTAAGAGCTAAGCCTTATCCAGGGGAGAGGAGAGTTGATTCCTATGATTTAGATTTTGAAATTTTCCAGAAGGCTATTACTGGTGGTTTCGTTCCTCCATTTCCTTCATCTGAGAATGAGCATGAAACCCATCTTCCTGTCAGAGAAAGCAGTTGGAGTATGCTTAGGCGTAAGTTTGCCTCTGGAAATATGAGAGAGTTTGTATCAGCTCCACGGATATCGCTCTCTAGGGTCTATTCTGACTCGTTGATGATGGTGCATTTTTCTGCAAAACCTTCATCGCCTTCAGCAATTTCTTTGTCTTCGTCATCTTCTTCGCCTATCCATCTTTCGCCAGACTCCCTTTCTTCTGATTCAAGTTCAAGTTCAAGTTCAAGTACCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCTTCTGCTTCTTCACCTACAGTTCAAGTTTCTTCAACTCTATCTAGTTTTTCTAACATGCATCTTATCTCATCCAATAGTTCCTTAGAATCGATGCCCAATGGTCCAGAAACTCGTGATGCAGTCCCTTTGGAATCAAGTTCTCGGTCATTCTCATTCCCATCCAAAAAGTTCTCACCTTCTCTTGCAGAACGCCGAGGTAGTGCAAAATCTCTGACATTGCCTACAATGCCTTGTAAAATCAGAGCAACAAATAGTGCCTCAAGGTTTCTTGCCACTCAAGAAGATGGTAAGAGGAAAAACAAGATTTCTTTCTCTCTTGATGCATCATTTAATATGAAAAAGGGCTCAGAGCCTATGGATAATGTTGAAGATGAACAAACAAGTTCCACTCAGAATTTCAAGAATATCGAAAATGGAATGGATGTACGGGTAGGTTGCATGGCCACGAGCCAGGTCGAAACTGAAGTTGCTGGACAATCAGCTGGTTCATGGAAAAGCTATCCAAAACATTTTGAAGAAGGCATGGTATCCACTGTGTCAAATGGGAAGCAAGATGGTGAGTTTGTCCAACCAATGGTATACTGTTGGCCGGAGTTAGCAAAGATTGCAGCTTTTGACAGAAGTTACCTTCATTCTAAAGCTGCCGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTATATTTGGGTAGGAAATTCTTTTGACCATGATTTATCTCCGATTCAAGTAAAGAGGGACAAAGACTTGGTTGATGTAGAAAAGATAGACTGGGTTAAAGTTGGCCAATATGTGCTTACTGAAATAGGTCTGCCAGACAATACAGAAATTAAGGAGACGCTTGAAAATCCAAGTCGTTTATAG 2532 43.01 MVGSEDSGTSGAAVQLSGNRKLFWRSASWSASRSSLHHPEVNREGGDPNGNLGDSSGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNCERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNAITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSTSSLDSRGAFIVHVPSAIFVWIGKNCEAIMERDARGAVVQIVRYEKVHGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKINLGELRAKPYPGERRVDSYDLDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSMLRRKFASGNMREFVSAPRISLSRVYSDSLMMVHFSAKPSSPSAISLSSSSSSPIHLSPDSLSSDSSSSSSSSTKYFSESSLDSPSASSPTVQVSSTLSSFSNMHLISSNSSLESMPNGPETRDAVPLESSSRSFSFPSKKFSPSLAERRGSAKSLTLPTMPCKIRATNSASRFLATQEDGKRKNKISFSLDASFNMKKGSEPMDNVEDEQTSSTQNFKNIENGMDVRVGCMATSQVETEVAGQSAGSWKSYPKHFEEGMVSTVSNGKQDGEFVQPMVYCWPELAKIAAFDRSYLHSKAAVVIFSPSRYLGKKDDMMLYIWVGNSFDHDLSPIQVKRDKDLVDVEKIDWVKVGQYVLTEIGLPDNTEIKETLENPSRL 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6379608 6383123 - Carg00286-RA Car04g01109 146534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01109 843 MobiDBLite consensus disorder prediction 574 619 - -
Car04g01109 843 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 210 271 IPR000387 GO:0016311|GO:0016791
Car04g01109 843 MobiDBLite consensus disorder prediction 521 554 - -
Car04g01109 843 ProSitePatterns Tyrosine specific protein phosphatases active site. 235 245 IPR016130 GO:0016311|GO:0016791
Car04g01109 843 MobiDBLite consensus disorder prediction 99 118 - -
Car04g01109 843 MobiDBLite consensus disorder prediction 30 68 - -
Car04g01109 843 ProSiteProfiles Dual specificity protein phosphatase domain profile. 151 293 IPR020422 GO:0006470|GO:0008138
Car04g01109 843 MobiDBLite consensus disorder prediction 590 606 - -
Car04g01109 843 Pfam Dual specificity phosphatase, catalytic domain 159 289 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01109 Car-Chr4:6379608 Car04g01803 Car-Chr4:10336560 0 dispersed
Car04g00215 Car-Chr4:1194765 Car04g01109 Car-Chr4:6379608 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01109 - - csv:101223210 1452.19