Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01111 ATGGCCATTGAGGTTGTTGTCAAGGCTGCTACTGGTGCTCCCGATGTTCTTGGAGACTGCCCTTTCTGCCACAGGGTTCTTTTAACTTTAGAGGAGAAGAAAGTTGCTTATAAATTGCTTCTTGTCAATCTCTCCGACAAACCCAGTTGGTTCTTGGAAGTGAGCCCAGAAGGGAAGGTGCCTGTTGTGAAGTTTGATGGCAAATGGGTTCCTGATTCTGATGTCATTGTGGGGATTCTTGAGGACAAGTATCCAGACCCTTCTCTTGTTACTCCTCCTCAATTTTCTTCTGTGGGATCAAAGATAAACGGTGCTTTTGTAAAATTCTTGTTGAGCAAGGACCCCAGTGATGGTTCAGAGCAGGCTTTGCTTGAAGAGTTGAAGGCGTTGGATGAGCATCTTAAGGCTCATGGTCCTTATGTTGCTGGAGAAAAGGTAACTGCTGTTGATTTGAGTCTGGCACCAAAGTTGTACCATATTGATATTGCTCTTGGCCATTTCAAGAAGTGGGTTTTCCCCGAAAACTTACGGAGTTTATCCGCATACAAAAAGTTGCTTTTCGCTCGAGAATCGTTCGTGAAGACGAAGGCTGTCCCAGAACATGTCATTGCTGGTTGGGAGACCAAGGTGAATGCTGCTTGA 642 45.33 MAIEVVVKAATGAPDVLGDCPFCHRVLLTLEEKKVAYKLLLVNLSDKPSWFLEVSPEGKVPVVKFDGKWVPDSDVIVGILEDKYPDPSLVTPPQFSSVGSKINGAFVKFLLSKDPSDGSEQALLEELKALDEHLKAHGPYVAGEKVTAVDLSLAPKLYHIDIALGHFKKWVFPENLRSLSAYKKLLFARESFVKTKAVPEHVIAGWETKVNAA 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6400060 6402272 - Carg00288-RA Car04g01111 146536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01111 213 SUPERFAMILY Thioredoxin-like 19 87 IPR036249 -
Car04g01111 213 Pfam Glutathione S-transferase, C-terminal domain 119 175 - -
Car04g01111 213 SUPERFAMILY GST C-terminal domain-like 99 209 IPR036282 -
Car04g01111 213 Gene3D - 90 212 - -
Car04g01111 213 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 10 88 IPR004045 -
Car04g01111 213 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 2 208 IPR044627 GO:0033355|GO:0045174|GO:0098869
Car04g01111 213 Gene3D Glutaredoxin 1 89 - -
Car04g01111 213 Pfam Glutathione S-transferase, N-terminal domain 19 87 IPR004045 -
Car04g01111 213 SFLD Glutathione Transferase (cytosolic) 19 174 IPR040079 -
Car04g01111 213 PANTHER DEHYDROASCORBATE REDUCTASE 2 208 - -
Car04g01111 213 CDD GST_N_family 20 77 - -
Car04g01111 213 SFLD Main (cytGST) 19 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01111 K21888 DHAR; glutathione dehydrogenase/transferase [EC:1.8.5.1 2.5.1.18] - cmax:111483829 374.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00219 Car-Chr4:1220319 Car04g01111 Car-Chr4:6400060 1.43E-118 dispersed
Car14g00753 Car-Chr14:4211907 Car04g01111 Car-Chr4:6400060 7.53E-93 transposed
Car04g00218 Car-Chr4:1218395 Car04g01111 Car-Chr4:6400060 1.16E-80 wgd
Car04g01111 Car-Chr4:6400060 Car06g00291 Car-Chr6:1626700 2.68E-09 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g01048 CST 1 209 Glutathione S-transferase Gene Family AT4G02520 59.4 3.3e-65 245.4
Car08g00362 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 2.2e-64 242.7
Car08g00363 CST 5 221 Glutathione S-transferase Gene Family AT4G02520 54.5 8.8e-58 220.7
Car17g01048 CST 1 210 Glutathione S-transferase Gene Family AT2G02930 60.6 1.0e-66 250.4
Car08g00362 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.7 7.5e-65 244.2
Car08g00363 CST 5 222 Glutathione S-transferase Gene Family AT2G02930 55.2 6.8e-58 221.1
Car08g00362 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 7.9e-61 231.1
Car17g01048 CST 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.3e-58 223.8
Car08g00363 CST 6 218 Glutathione S-transferase Gene Family AT1G02950 51.9 1.7e-55 213.4
Car08g00362 . 1 210 Glutathione S-transferase Gene Family AT1G02930 58.6 2.5e-65 245.7
Car17g01048 CST 1 210 Glutathione S-transferase Gene Family AT1G02930 59.0 4.3e-65 245.0
Car08g00363 CST 5 222 Glutathione S-transferase Gene Family AT1G02930 53.2 1.5e-57 219.9
Car17g01048 CST 1 210 Glutathione S-transferase Gene Family AT1G02920 60.5 1.8e-66 249.6
Car08g00362 . 1 210 Glutathione S-transferase Gene Family AT1G02920 58.6 6.7e-66 247.7
Car08g00363 CST 5 222 Glutathione S-transferase Gene Family AT1G02920 54.6 6.0e-59 224.6
Car08g00362 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 1.6e-69 260.0
Car17g01048 CST 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 5.4e-65 245.0
Car08g00363 CST 4 225 Glutathione S-transferase Gene Family AT2G47730 53.4 2.6e-59 226.1
Car14g01764 CST 47 202 Glutathione S-transferase Gene Family AT1G17180 51.6 1.1e-39 160.6
Car02g00463 . 50 220 Glutathione S-transferase Gene Family AT2G02390 67.3 3.1e-62 235.3
Car02g00464 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 7.7e-61 230.7
Car06g00974 . 60 226 Glutathione S-transferase Gene Family AT2G02390 53.9 2.6e-48 189.1
Car02g00464 . 10 220 Glutathione S-transferase Gene Family AT2G02380 62.1 1.6e-73 273.1
Car02g00463 . 9 218 Glutathione S-transferase Gene Family AT2G02380 62.4 7.8e-73 270.8
Car06g00974 . 17 225 Glutathione S-transferase Gene Family AT2G02380 55.0 1.6e-62 236.5
Car04g00676 . 1 229 Glutathione S-transferase Gene Family AT5G41210 69.4 2.9e-89 325.5
Car16g00531 . 1 256 Glutathione S-transferase Gene Family AT5G41210 63.7 8.6e-89 323.9
Car16g00531 . 1 256 Glutathione S-transferase Gene Family AT5G41240 62.5 9.6e-86 315.1
Car04g00676 . 1 229 Glutathione S-transferase Gene Family AT5G41240 67.7 6.2e-85 312.4
Car06g00291 . 4 232 Glutathione S-transferase Gene Family AT5G02780 67.5 2.3e-83 305.8
Car06g00290 . 10 249 Glutathione S-transferase Gene Family AT5G02780 57.3 2.8e-68 255.8
Car06g00291 . 3 230 Glutathione S-transferase Gene Family AT3G55040 56.8 2.9e-75 279.3
Car06g00290 . 5 249 Glutathione S-transferase Gene Family AT3G55040 51.0 1.5e-60 230.3
Car06g00291 . 4 232 Glutathione S-transferase Gene Family AT5G02790 69.1 3.0e-91 332.0
Car06g00290 . 10 251 Glutathione S-transferase Gene Family AT5G02790 55.8 2.5e-69 259.2
Car04g00219 . 284 492 Glutathione S-transferase Gene Family AT1G19570 68.1 8.2e-80 293.9
Car04g01111 . 1 211 Glutathione S-transferase Gene Family AT1G19570 65.1 1.6e-78 289.7
Car14g00753 . 67 275 Glutathione S-transferase Gene Family AT1G19570 61.4 6.8e-74 274.2
Car04g00219 . 284 493 Glutathione S-transferase Gene Family AT1G75270 72.0 2.4e-87 318.9
Car04g01111 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.9 1.6e-86 316.2
Car14g00753 . 67 275 Glutathione S-transferase Gene Family AT1G75270 63.3 2.1e-75 279.3
Car04g00218 . 1 165 Glutathione S-transferase Gene Family AT1G75270 50.7 3.3e-52 202.2
Car14g00753 . 56 277 Glutathione S-transferase Gene Family AT5G16710 76.6 3.0e-100 362.1
Car04g00219 . 284 491 Glutathione S-transferase Gene Family AT5G16710 59.1 7.7e-72 267.7
Car04g01111 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 1.1e-70 263.8
Car09g00677 . 1 267 Glutathione S-transferase Gene Family AT1G77290 68.5 1.7e-106 382.9
Car04g01134 . 1 324 Glutathione S-transferase Gene Family AT1G77290 56.8 2.6e-99 359.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003067 2 1 1 1 2 1 3 1 1 1 1 1 3 1 1 4 1 2 2 1 1 2 2 3 2 1 2 5 2 0 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01111 Car_Chr04 FPKM 1.443888 2.269572 4.640584 4.270124 10.763839 10.756178 10.638065 6.831695 7.924508 6.740979