Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01115 ATGGCCTTCTATACGGTAAAATGGCAATGGCTACTGATTCTTCACATTGTCCCGCTTTTCATGATAATGAGCAGAAGCAGTGGTACCAGTTCTGATGGTGAGGCACTTTTGAGCTTCAGAGCAGCAATTCTTGATTCTGATGGCGTTCTTCTTCAATGGAAGCCAGAAGAATCCCATCCTTGTAAATGGAGAGGAGTAACGTGTGATCCAAAAACTAAGAGAGTGATATATCTGAGTCTTCCTCATCACAAACTTAGTGGATCTTTATCCCCTGAACTTGGAAAACTTGACCACTTAAAAATTTTAGCACTTCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAGGGAGTGTTTCTGCAGGGTAATTACTTTAGTGGGTTCATTCCCAATGAATTGGGAAATCTTTCGGCACTTAAAAATTTAGATATTTCAAGTAACTCTCTCGGTGGAAATATTCCCATCTCGCTTGGGAACTTGAGCAAGCTTACTACCCTAAATGTGTCTGCCAATTTTCTGGTTGGATCAATACCGAATGTTGGAGTGCTAATCAACTTCTCGGAAAGCTCATTTCTTGGAAACCGTGGCTTGTGCGGGAAGCAAATAAATGTTATGTGCAAAGATGACAAAGAGACACCTGGAACAAATGATTCACCATTCTCAGTGCAAGATCAATTTGTAAGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTCGGCAACTGTGGGTGCTCTACTACTGGTTGCCCTAATGTGTTTCTGGGGTTGTTTTCTGTATAAAAAGTTCGGAAAAAATGACAGTAAAGGTCTAGTGCTGGACGTTTGTGGAGGCGCTTCGGGTGTAATGTTTCACGGAGACTTGCCATACTCATCTAAAGATATTATTAAGAAATTTGAGACACTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACCGTATACAAGCTTGCAATGGATGATGGCAATGTTTTTGCCTTGAAAAGAATCATGAAACTGAATGAAGGCTTTGATCGGTTCTTTGAGAGAGAGCTCGAAATACTTGGAAGCATGAAGCACAGGTTCCTTGTGAACTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTCCTGGAGGCAGCCTTGATGAGGCACTACACGAGTACATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGGGTATTGGTACTTGAAGTCTTGAGTGGCAAACGTCCCACCGATGCATCATTCATTGAAAAGGGGCTAAACATCGTTGGTTGGTTAAACTTTCTAGTCACAGAGAGCCGACAACGAGAAATCATTGACGTACAGTGCGAGGGAATGCGAACAGAAAGCCTCGACGCATTGGTTGCAGTTGCGATCCAATGCGTTTCATCGAGTCCAGAAGAACGCCCCACCATGCACAGGGTGGTCCAGATATTGGAGTCTGAGGTTATGACTCCATGCCCAAGTGATTTCTATGATACAGATTAA 1536 42.25 MAFYTVKWQWLLILHIVPLFMIMSRSSGTSSDGEALLSFRAAILDSDGVLLQWKPEESHPCKWRGVTCDPKTKRVIYLSLPHHKLSGSLSPELGKLDHLKILALHDNNFYGTIPSELGNCSQLQGVFLQGNYFSGFIPNELGNLSALKNLDISSNSLGGNIPISLGNLSKLTTLNVSANFLVGSIPNVGVLINFSESSFLGNRGLCGKQINVMCKDDKETPGTNDSPFSVQDQFVRKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKGLVLDVCGGASGVMFHGDLPYSSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIMKLNEGFDRFFERELEILGSMKHRFLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTESRQREIIDVQCEGMRTESLDALVAVAIQCVSSSPEERPTMHRVVQILESEVMTPCPSDFYDTD 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6427648 6436406 + Carg00292-RA Car04g01115 146540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01115 511 Pfam Protein kinase domain 312 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01115 511 ProSiteProfiles Protein kinase domain profile. 310 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01115 511 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Car04g01115 511 ProSitePatterns Protein kinases ATP-binding region signature. 316 342 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01115 Car-Chr4:6427648 Car11g00135 Car-Chr11:764403 2.05E-32 dispersed
Car04g01115 Car-Chr4:6427648 Car09g00658 Car-Chr9:3862978 1.42E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88799 PF00069 Pkinase 5.70E-11 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01115 - - csv:101211605 743.421