Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01135 ATGGGAAGAGGGAAGATCGAGATCAAGCGGATTGAAAACTCAAGCAACCGACAAGTCACTTATTCAAAGAGACGAAATGGGATAATCAAGAAGGCTAAAGAAATCACTGTTCTTTGTGATGCTCATGTTTCTCTTGTTGTTTTTGCTAGCTCTGGCAAAATGCATGAGTATTGCAGCCCTTCTATGCAGTTGGTTGATATCTTGGATAAGTATCATAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAGCATGAGAATCTGAGCAATGAATTGGATAGAGTGAAGAAGGAAAACGACAACATGCAGATTGAGCTGAGGCATCTGAGAGGCGAAGATATAACGTCTCTCAATTACAAGGAGCTAATGGCTCTTGAACAAGCTCTTGAAAATGGCCTCATTGGTGTTCGTGAAAAGCAGTCGGAGTTCATGAAAATGATGAGGACAAATGAGAGGATGATGGAAGAGGAGAATAAGCGGCTGAACAATGAGCTGTACCAAAAGGAGATGGAAGCCATGGGGGAATGTGTGAGAGAAATGGATAATGGATACAATCAGAGAATGAGAGATTTCAATTCTCAGATGCCTTTTGCCTTCAGAGTGCAGCCTATTCAGCCAAATCTACAAGAAAGGATATAA 636 41.82 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAHVSLVVFASSGKMHEYCSPSMQLVDILDKYHKQSGKRLWDAKHENLSNELDRVKKENDNMQIELRHLRGEDITSLNYKELMALEQALENGLIGVREKQSEFMKMMRTNERMMEEENKRLNNELYQKEMEAMGECVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERI 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6549010 6552889 - Carg00312-RA Car04g01135 146560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01135 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car04g01135 211 Pfam K-box region 82 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g01135 211 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 210 - -
Car04g01135 211 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Car04g01135 211 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g01135 211 Coils Coil 143 170 - -
Car04g01135 211 Coils Coil 77 111 - -
Car04g01135 211 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Car04g01135 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Car04g01135 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car04g01135 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car04g01135 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car04g01135 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car04g01135 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car04g01135 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car04g01135 211 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01135 Car-Chr4:6549010 Car09g00110 Car-Chr9:542594 1.36E-40 dispersed
Car04g01135 Car-Chr4:6549010 Car09g00678 Car-Chr9:3977159 9.45E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3330 PF01486 K-box 4.00E-18 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01135 K09264 - csv:101222239 368.622