Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01140 ATGGTTACATTTGATTTCTTAATTGCTCACCATTTCTATTGGGCTATTTTTACTTGGTCTTGGATCGGGTGCTTGTGTGGGGAAGCTAAATTGTCATCTCAGTGTTTTTTCCACTTCTGTAGAATTATAGAACCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAGAGGTCATGGGCAAGCGCATATTGCACATTAGCAATGAAGAAGGTCTAAGTCTAGATGAAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTGCGTCGAGCTATCACATATTTACAGTCAGCTGCACGTTTATTTGGATCATCAATCTCTTCCAAGGATCTGATTAGCGTGTCTGGGATTATCCCACGGGAGGTTGTTGATGAGCTTTTTGCTGCTTGTAAAAGTGGTAACTTCGATCTTGCAAATAAGGAAGTCAATAATGTAATTGCAGAAGGATATCCTGTGGCTCAGATGCTTTCACAGATATTTGAGGTGGTTATTGAAGCCCATGATTTGCAAGATGAACAAAAGGCCAAGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTGGTTGATGGTGCGGATGAATATTTGCAGCTGCTGGATGTGGTTAGTCAAACAATGCAAGCTTTGAGTAGCAGTATGCAACTGTAA 666 41.44 MVTFDFLIAHHFYWAIFTWSWIGCLCGEAKLSSQCFFHFCRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6565584 6568132 - Carg00317-RA Car04g01140 146565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01140 221 Pfam Replication factor C C-terminal domain 125 210 IPR013748 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01140 Car-Chr4:6565584 Car16g00970 Car-Chr16:8093396 7.50E-10 dispersed
Car04g01140 Car-Chr4:6565584 Car04g02301 Car-Chr4:18466410 3.10E-08 transposed
Car04g01140 Car-Chr4:6565584 Car15g00613 Car-Chr15:3395071 2.90E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01140 K10755 - csv:101221224 310.071