Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01161 ATGGTGAAGAAATCGGAGAAGGCGGCGGCGGAATCGTTTCCTGTGGCGGCGCCGTCGTGTAAAAAGAAGTACAAGGGTGTTAGAATGAGGAGTTGGGGGTCGTGGGTATCGGAGATTCGAGCGCCGAATCAAAAGACGAGGATTTGGTTAGGGTCTTATTCGACGGCGGAAGCTGCGGCGCGTGCTTACGACGCGGCGCTTTTATGTCTCAAAGGTGCTTCGGCTAGCCTTAACTTCCCGGAAATTGCTAACTCTATTCCGATTTCCGATCACTGCCACTTCCGCCGCTTACACCACCATATTGATTCCTCTGATGCCGACATTATGTCTCCTAAGTCCATCCAGCGTGTCGCCGCCGCTGCCGCTAATGGCTTCCGGGAAAATGTCTCCTCCGCCGTTGTCACTTTCCCACCATCCCCCGCCGTCTCGTCCCCGTCTCTCTCCTCCGATCTTCCGGACGATGAAGCGTCGGTCACCGTGTCGTCCGATGGTGTCTACGATCAAATCGATCCGTCGACGGCGGAGATGGATTCATGGTGCAATTACCTTGATACCCTTCAGTCGCCGAAATTCATTGACCAAATGCTCACCGAAGCTTGGTTCGATTTCGGTTCGATTCCGGCGGCCGAAATTCCCGATTTTTACGAGGAAGAAAGCGACATCAGATTGTGGAGCTTCTGCTGA 684 53.95 MVKKSEKAAAESFPVAAPSCKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGASASLNFPEIANSIPISDHCHFRRLHHHIDSSDADIMSPKSIQRVAAAAANGFRENVSSAVVTFPPSPAVSSPSLSSDLPDDEASVTVSSDGVYDQIDPSTAEMDSWCNYLDTLQSPKFIDQMLTEAWFDFGSIPAAEIPDFYEEESDIRLWSFC 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6669965 6670648 - Carg00338-RA Car04g01161 146586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01161 227 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Car04g01161 227 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01161 Car-Chr4:6669965 Car04g02279 Car-Chr4:18341406 2.48E-44 dispersed
Car15g00636 Car-Chr15:3524944 Car04g01161 Car-Chr4:6669965 3.79E-30 wgd
Car04g01161 Car-Chr4:6669965 Car09g00718 Car-Chr9:4261606 3.26E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3332 PF00847 AP2 6.20E-12 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01161 - - csv:101215527 290.426