Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01163 ATGATTTCCTTGCAATTCGGGTATGCCGGGATGTACGTCATCACCATGCTCTGCCTTAAAAAGGGCATGAACCATTACGTTCTCGCCGTGTATCGACACCTTGTTGCCACCATCGTCATTTCCCCCTTCGCTTTCGTTCTCGAGAGGAAAATAAGGCCGAAGATGACATTTCCCATTCTTGCTCGAATACTACTCCTCGGCTTCCTCGAGCCTGTGTTGGATCAAAATCTTTACTACGTGGGGTTAAAACTTACCTCAGCAACATTCACTTCTGCTACCGTTAATATTCTCCCCGCTGTAACTTTCATTATGGCTCTCGTTTTCAGGCTGGAAACAGTGAATTTCAAGAAAATTCGCAGCATCGCAAAGGTGGCCGGAACAATGGTGACGATCGGCGGAGCCATGGTGATGACTCTATACAAAGGACCGGTGGTGGAGATCTTCCACGCCCATGGCCACCACGCCGCCCAACAAACCAGCAGCGAGTCCGCCGACCAACACTGGGTCCTCGGCACCCTCATGCTCCTCGGCAGCATCGTCGGCTGGTCCGGCTTCTTCATCTTGCAATCGTTCACCTTGAAGAAGTACCCGGCCGAGCTGTCGCTGACCGCCTTGATATGCATCGCCGGTACGGTAGAGGGCTCCATTGTCACGCTCATTATGGAGCGTGATTTTAGCGTGTGGGTCATCGGTTGGGACTCCCGTCTTCTAGCAGCTGTTTATACTGGTGTGATATGCTCTGGGCTTGCTTATTATATTCAAGGCGTGGTAATTCGGCAACGTGGCCCAGTTTTTGTTACCTCTTTTACCCCTCTCTGCATGATTATTACTGCCTTCCTTGGCTTCGTTATTTTGGCAGAGCAAATTCACCTTGGAAGCATAATCGGAGCCTTTTTCATAGTGATGGGGCTTTACTTAGTGGTGTGGGGCAAAGCCAAGGACCATCTCAACAAATTAACCAGTCAAAAGGGCGGCGCCGCCACGGAGTTGCCACTCACCGCCGAGCCGGAAACCGCCCAGCCCGCCACCAACGAGCGTTTCTCTTCCAAAGCTCCACCGGCGTGA 1065 51.83 MISLQFGYAGMYVITMLCLKKGMNHYVLAVYRHLVATIVISPFAFVLERKIRPKMTFPILARILLLGFLEPVLDQNLYYVGLKLTSATFTSATVNILPAVTFIMALVFRLETVNFKKIRSIAKVAGTMVTIGGAMVMTLYKGPVVEIFHAHGHHAAQQTSSESADQHWVLGTLMLLGSIVGWSGFFILQSFTLKKYPAELSLTALICIAGTVEGSIVTLIMERDFSVWVIGWDSRLLAAVYTGVICSGLAYYIQGVVIRQRGPVFVTSFTPLCMIITAFLGFVILAEQIHLGSIIGAFFIVMGLYLVVWGKAKDHLNKLTSQKGGAATELPLTAEPETAQPATNERFSSKAPPA 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6685745 6687764 + Carg00340-RA Car04g01163 146588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01163 354 MobiDBLite consensus disorder prediction 323 354 - -
Car04g01163 354 Pfam EamA-like transporter family 170 308 IPR000620 GO:0016020|GO:0016021
Car04g01163 354 Pfam EamA-like transporter family 10 121 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01163 Car-Chr4:6685745 Car07g00952 Car-Chr7:5393100 3.63E-126 dispersed
Car04g01954 Car-Chr4:13134365 Car04g01163 Car-Chr4:6685745 1.35E-64 transposed
Car05g00933 Car-Chr5:9032763 Car04g01163 Car-Chr4:6685745 1.45E-77 transposed
Car04g01163 Car-Chr4:6685745 Car04g02281 Car-Chr4:18354766 4.95E-20 wgd
Car04g01163 Car-Chr4:6685745 Car09g00716 Car-Chr9:4243046 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01163 - - csv:101216002 617.076