Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01209 ATGATGGCTGTGACCTCCAGCTGCAAAGATGCTGCTAGCATGGATAATGGCAAATATGTTAGGTACACACCTGAGCAAGTCGAAGCTCTTGAGAGGCTCTATTATGATTGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTCATCAGGGAGTGCCCAATTCTCTCCAATATCGAGCCCAAGCAGATCAAAGTTTGGTTCCAAAATCGGAGATGTAGAGAGAAACAGAGGAAGGAATCATCACGCCTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGCTGCAGAAACAGGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCCTAGCCACCACTGACACGAGTTGTGAGTCAGTGGTTACAAGTGGTCAACAGAATTTGACCCCGCCGCATCCTCCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGCTGCACTGGAGTTGCAGCTCGTGCGTGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTATCGCGATTGCCGTGCTGTTGACGTTCTAAACGCCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTTTATATGCAGCTCTATGCGCCTACCACTCTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTATGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTACAAAACTTTGTAAGAGCAGAAATGCTACCTAGTGGATATTTGATAAGACCTTGTGAAGGCGGTGGATCAATAATTCATATAGTTGATCACATGGAGTTAGATCCTTGGAGCGTGCCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGCTACTGGTTGGGGAAGACGACCTGCTGCTCTTCGCGCTCTTAGTCAGAGATTGAGCAGAGGTTTCAACGAAGCAGTAAACGGGTTTACAGATGAGGGATGGTCTTTGTTAGAAAATGACGGCATTGATGATGTTACACTTCTTGTAACCATGTCTAATGGCAAGACAATGATGGGTGCAAATATTTCATATAATAATGGCTTTCCATCTATGAGCAACGCAGTGCTTTGTGCCAAAGCATCGATGTTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGGTCAGAATGGGCAGACACCAGTATTGATGCTTACTCAGCTGCAGCAATTAAGACTGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGTTTATGGAAGTTCTTAAATTTGAAAACGTGGGCCACTATAGGGATGATATGCTCATGTCTGGTGACATCTTCCTCCTCCAACTTTGCAATGGCGTGGAAGAGAATGCAGTAGGAACTTCTGCTGAACTCATCTTTGCTCCCATTGATGCCTCTTTTTCTGATGATGCACCCATTTTGGCATCTGGCTTCCGCATCATCCCTCTTGATTCTGGAATTGATGCTTCAAGTCCAAACCGCACGCTTGATCTTGCTTCAGCTCTTGATGTCGGACCGGCAGGGAATAGAGCTGCTGGTGATTATGCTTGTCAATCAGGAAAATCCAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCATCTTCAAGATAATGTAGCAGCAATGGCACGGCAGTATGTCCGAAGCATTATAGCATCTGTTCAGAAAGTGGCACTGGCTCTTTCCCCTTCGAATGTCGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAAACACTTGCTCGTTGGATCTGTCAAAGCTATAGGTGCTACATGGGCATGGACTTACTGAAAAATGAAGGAAGAGAACCCATTCTCAAATCCCTTTGGCATCACTTAGATGCAGTCATGTGCTGCTCTTTAAAGGTATGA 2187 46.04 MMAVTSSCKDAASMDNGKYVRYTPEQVEALERLYYDCPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWYRDCRAVDVLNALSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMELDPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNATGWGRRPAALRALSQRLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVTMSNGKTMMGANISYNNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADTSIDAYSAAAIKTGQCGLPGSHAGTFGGQFMEVLKFENVGHYRDDMLMSGDIFLLQLCNGVEENAVGTSAELIFAPIDASFSDDAPILASGFRIIPLDSGIDASSPNRTLDLASALDVGPAGNRAAGDYACQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQKVALALSPSNVGPHANLQTPAGAPEAQTLARWICQSYRCYMGMDLLKNEGREPILKSLWHHLDAVMCCSLKV 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6951162 6956673 + Carg00386-RA Car04g01209 146634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01209 728 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Car04g01209 728 Pfam START domain 162 370 IPR002913 GO:0008289
Car04g01209 728 Coils Coil 87 114 - -
Car04g01209 728 Pfam MEKHLA domain 684 727 IPR013978 -
Car04g01209 728 ProSiteProfiles START domain profile. 152 366 IPR002913 GO:0008289
Car04g01209 728 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01209 Car-Chr4:6951162 Car08g00617 Car-Chr8:3969220 0 dispersed
Car04g01209 Car-Chr4:6951162 Car09g00558 Car-Chr9:3161431 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3335 PF01852 START 6.00E-54 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01209 K09338 - csv:101218438 1393.25