Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01234 ATGGAGTTGAATGAACACTGTTTGTTAGATGAACTTCAAGCCTTGAGAAGGGAAATTAATTGGGAATTAGCAATGCCCACTGAAATTAACGACCTAATCTCCACTGCTAATGGCTGGAATTTTGATTGCTCTGATTCTTCTTCTTTCCCCTTTTCTTTACCTATTGACTACCAGGATTTTGGCTATCTTCTCGGCGGCGAAGACGACTATTCTTTTTCCGGCGGCCAGTTCACGGCGGCTCCGAGTACCGGCGATTCGATGTCGTACACTACGTTCGAGACTACGCCGGGGGGTTTCGGCAGGTGTCCGGTTATGGAAGAGGAGGATGAGATTCCGAATCTTGAAGTTCTGGGTAGTTGTAAAATGGAGCCGGCTTATTCTCCTGAAATTGCTCCGGTTTTCAACGCCGGTGGCACGTGCGATTTTGGCCAAAAGATCGTTGGTTCGGCGAGTAAGAAGCTTCAGGGGAAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAAAGGCTTAATGATCGCCTCTCCATGCTCCGATCCATCGTCCCCAAAATCAGCAAGATGGATAGAACTGCGATTCTTGCGGATTCGATTGATTACGTGAAGGAACTGCTCGAGAAAATCAACCATTTGCAAAGGGAGATTGAAATGGCGAACCCGAGTAAATTGGAGTCTACAGGGATTTTGAGAGCTGAGAATCCGAGTGAATATTTGGTCAGAAATGCACCTAAGTTTAATGTGGAAAGGAGAGAAGGTGATACTCGGATTGAGATTTGCTGTGCGGCTAAGCCTGGCTTGTTGTTGTCTACAGTGCACACTCTTGAAGCTTTAGGACTTGATATTCAGCAATGTGTCATTAGCTGCTTCAATGACTTCGCAATTCAAGCCTCTTGTTCCGAGGCACGTCTAAATCAAATTCTTTTAACTAATCGAGCTAGGTTCAAGTTCGGAACGGAGCGGAGACCGGTTGAAGAAGTAAAACAAGCATTATTTGAAAATGCTGGATATGGAGGAAGATGTTTGTAG 1029 46.06 MELNEHCLLDELQALRREINWELAMPTEINDLISTANGWNFDCSDSSSFPFSLPIDYQDFGYLLGGEDDYSFSGGQFTAAPSTGDSMSYTTFETTPGGFGRCPVMEEEDEIPNLEVLGSCKMEPAYSPEIAPVFNAGGTCDFGQKIVGSASKKLQGKPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADSIDYVKELLEKINHLQREIEMANPSKLESTGILRAENPSEYLVRNAPKFNVERREGDTRIEICCAAKPGLLLSTVHTLEALGLDIQQCVISCFNDFAIQASCSEARLNQILLTNRARFKFGTERRPVEEVKQALFENAGYGGRCL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7104038 7105736 - Carg00411-RA Car04g01234 146659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01234 342 Pfam Helix-loop-helix DNA-binding domain 162 205 IPR011598 GO:0046983
Car04g01234 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Car04g01234 342 Coils Coil 195 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00782 Car-Chr3:6511291 Car04g01234 Car-Chr4:7104038 3.69E-76 dispersed
Car04g01234 Car-Chr4:7104038 Car05g00509 Car-Chr5:2951105 1.58E-101 dispersed
Car04g01234 Car-Chr4:7104038 Car09g00538 Car-Chr9:3044325 2.06E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3337 PF00010 HLH 8.90E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01234 - - cmax:111480299 612.068