Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01240 ATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGAAGGAGTGGACTGCTGAAGAAGGCGAAAGAACTGGCGATCCTTTGTGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTTTATGAATACTCCAGCACCAGCATGAAAACACTAATAGAACGATATCACAAGACAAAAGAGGAGCACCATCAGCTTGGGGTCTCGACTTCAGAAGTCAAGTACTGGCAAAGGGAAGCAGCAATGTTACGGCAACAACTGCAGAGCTTACAAGAAAATCATCGGCAGATGATGGGTGAAGAGCTGACTGGTCTGAGTGTCAAAGATCTACAGAATCTAGAAAACCAACTGGAGATAAGTCTCCGTGGTGTCCGTATGAAGAAGGGAAACCTAATTCACCAAGGCAATATGGAACTTTATAAGAAGGTAAACCTAATTCGTCAAGAAAATCTGGAATTATACCAAAAGGTCTACGGAACAAAGGATGCCAAGGGGGCAAGCAGTCTTACAAATGGCCTGGGTGTGGGAGAGGATGCAGGTATACCTATCAGCCTTCAACTCAGCCAACCACAACAACAAAACCTTGAGGCACCAGAAAAAGCAACAAAACTGGGGTACAGTTGCGACAAAATGCATAAA 678 45.43 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSMKTLIERYHKTKEEHHQLGVSTSEVKYWQREAAMLRQQLQSLQENHRQMMGEELTGLSVKDLQNLENQLEISLRGVRMKKGNLIHQGNMELYKKVNLIRQENLELYQKVYGTKDAKGASSLTNGLGVGEDAGIPISLQLSQPQQQNLEAPEKATKLGYSCDKMHK 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7144068 7154641 - Carg00418-RA Car04g01240 146665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01240 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car04g01240 226 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g01240 226 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g01240 226 Coils Coil 86 113 - -
Car04g01240 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car04g01240 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00779 Car-Chr3:6495384 Car04g01240 Car-Chr4:7144068 3.17E-74 dispersed
Car04g00386 Car-Chr4:2188168 Car04g01240 Car-Chr4:7144068 3.45E-84 dispersed
Car04g01240 Car-Chr4:7144068 Car16g00251 Car-Chr16:1590857 6.05E-80 dispersed
Car19g00350 Car-Chr19:5391161 Car04g01240 Car-Chr4:7144068 2.88E-34 dispersed
Car04g01240 Car-Chr4:7144068 Car09g00532 Car-Chr9:2996348 1.57E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3338 PF01486 K-box 3.70E-22 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01240 K09264 - csv:101203545 359.762