Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01242 ATGTATCAGATCCACCCCGCCAACCAATCGCGCCACTTCCATACTTCTCCAAATTCTATTCTTCGGCGTCGAGCGTCGAGCAATGTAATTCTCAATCCTAAAGAGAATAGGAAAAGTCATTGTACAGTATCGATCATCGGAATCCATTTGATACCTAAAATCGCCACAATCCGTTTTATTCTCAGTCGATCGTTGTTCACGATAGATCAGTATGCGCTATCAGTCTCCGTCATCACAAGAAACACTTCTTCTTTTCCGTTTTCTGTCCGTTCTTCCGACTCTTGTTTCTCAAGAAATTTCAGAATCGAAGGTCTCACAATGTCTTCCCGGGGAGTGCGATTGCAGATACGAGATCATCATGTGGTAGTAGATAATGGAATACTGCAACTAACTCTCTCAAAACCAGACGGAATTATCACTGGTATACGTTATAATGGTGTTGACAATCTGCTTGAAGTTCTCAACCCTGAATCTAACAGAGGGTATTGGGATATTGTTTGGAATTCTCCAGGAAGCCAGGGGATATTTGACGTGATTAAGGGATCAAGTTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTACAAGGATGTGGGATCCGTCCCTCGAGGGCAAGGTTGTTCCTCTGAATATCGACAAGAGGTTCATAGTTCTACGTGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGCTGACAACAGGCAGAGATTGATGCCCCTGCCCGATGATCGGTTATCTGGCAGATGCCAGACTTTGGGCTTCCCTGAAGCTGTCTTGCTTACCCATCCCAAGAACCCTGAACACAAGGATGAGGTGGATGACAAATACCAATACTCATGTGAAAACAAAGACTTAAAGGTCCATGGATGGATAAGCACCAACCCGCCCATCGGGTTCTGGCAAATTACACCGAGCGATGAATTTCGATCAGGCGGGCCACATAAGCAGAGTTTAACATCCCATGTGGGACCTACAACTCTTGCTATATTTCTTAGTACTCATTATGCTGGACAAGATTTGGTGCCAAAATTTAGAAATGGCGAGCCATGGAAGAAAGTTTTTGGGCCTGTTTTTCTTTATCTTAACTCCACCAAAGCTGGAGATGATCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGACAGAAGTCCAAAGTTGGCCATACAGTTTCCCCGCCTCCGACGATTTCCCGAAACTGGATCAACGGGGTACCATTAGCGGTAGGCTTCTGGTTTTCGACAGGTATATGAGTCGAGACTATCTTCCAGCCGGTGGAGCGTTCGTCGGATTGTCTGCACCAGGAGAAATAGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCGGATGATCGTGGCTATTTTATCATCAATCACGTTCACATTGGCCAATATAATCTATATGCATGGGTCCCTGGCTTCATTGGTGATTACCGTTGCGATGCCTTAATCAACATAAGCCAAGGATCTAGCATTGAACTTGGCGATCTTGTTTACGAACCTCCAAGAGATGGACCGACACTATGGGAGATAGGCATTCCCGATCGCTCCGCGTCGGAGTTCTACGTTCCTGATCCTAATCCATTGCATATTAATAAGCTCTTTGTAAATCATCCTGAAAGGTTTCGACAGTACGGGTTGTGGGAGAGGTACGCTGAATTATACCCGGACGAGGATTTAGTATACACTGTTGGCACAAGTGATTATAGTAAAGATTGGTTCTTTGCTCAGGTCCCAAGGAAGACGAACGATAATTCACATCAAGGAACTACCTGGAAAATCGCATTCAAACTTGATCGAGTAGATCGCAAGAATAGGTATATGCTACGAGTCGCAATTGCATCTGCAACTCTTGCTGAATTGCAGATTCGGGTTAATGATCCGAGTTCAAAACGACCTTTGTTTACGAGCGGGTTGATAGGGAGAGACAACTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGGCATAGCAGGCTTACACCTTGTTGAAGGAGATAACGCAATCTTCTTTACTCAGCCACGCTGCACCAGCCCTTTCCAAGGTATCATTTTAATTTGTTCATTGGTTCGGGTTAACTCGAAGTTAGCCGTTGTTATGGAGAACGGAATAATTGCAGTGACGATATCGAATCCGATGGGATTTGTCACCGGAATACAATATCATGGGATTGAAAACTTGCTTGATGTGACCAATCCTGAAGATGATAGAGGATATTGGGACGTTGTTTGGAACACCGCAGGAGCAAAAGGAACCAAAGGCATGTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATCGTACAAAATGACGAACAGATAGAACTCTCATTCAGCAGAGCTTACAATTCATCCTCCGGAGACGACGTAGTTCCTTTGAATGTCGACAAAAGGTTCGTGATACTTCGAAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGACTGGCCAGCGTTTAACATCGACAACACCAGAATCGCATTCAAGCCGCGAAAAGACAAGTTTCGGTACATGGTAGTAGCAGATGAGAGACAGAGATTCATGCCTTTACCAGACGATCGGAAGCCACCGCGAGGAGTAGCCCTAGAATATCCAGAGGCCGTCCTCCTTGTGGATCCTATAGAACCCGAGTTCAAGGGAGAGGTGGATGACAAGTACCAATACGGGTGCGAAAGCAAAGACACTCGGGTTCACGGGTGGATATCCAACGACCCGCCCATTGGCATTTGGCAAATCACAGCCAGCGAGGAGTATCGCTCCGGTGGGCCCCTCAAACAAGTTCTCACCTCCCATGTGGGTCCCACCTCCCTTACGATCCACTCAGACTTTGGCAAAATGCTAAAGAACAGATATGTGAGTAATGAATCCATACCTGCAAGTGGTGCATATGTGGGGCTGGCACTTCCCGGGGAACTTGGCTCCTGGCAAACAGAAAGCAAGGGCTACCAATTCTGGAGCAGAGCAGATGAGAATGGACATTTCACTTTGGAAAATGTTCTCAGTGGAAATTATAGTCTTAATGGATGGGTCTATAATTTTATCAGCGAGTACCAATATGATGCTTTCATCACTGTAACCCCAGGAAGCGATATCGATGTGGGTGAACTTGTTTTCGAGCCTCCAAGAGATGGTCCAACGTTGTGGGAAATAGGCATTCCAGATCGTACTGCTGCAGAATTCTATGTACCAGATCCTAGTCCCAAGTTTATTAATAAACTTTTTGTCAATCATTCAGATAAGTTTAGGCAGTATGGATTATGGGAAAGATACGCAGAATTATATCCTAAGGAGGACCTAGTTTATACGGTTAACCAAAGTGACTACAAAAAAGATTGGTTCTTTGCACAAGTTAACAGGAAGATAGACGACAACAACACATATGTAGGAACTACTTGGAAAATTGAGTTCAAAATTGACAGTCCAGATACACATGGAACGTATAAGCTGCGTCTTGCATTGGCCACTGCACATGCTGCAGAATTACAAGTTCGAGTGAATGATGCACAAACAGTTACCCCGTTATTCACAACTGGAGTAATTGGAAAGGACAACACTATAGCTAGACATGGAATTCACGGTCTGTACCGGTTTTACAGTGTCGATATTCCGGGCAGTGAGCTTGTGGCGGGCAACAATACAATTTTTCTTACACAAACAAATGACCACGGTCCTTTTGTTGGGATTATGTATGATTATATTCGTTTGGAAGGACCCTTAACTTCCTAA 3813 44.14 MYQIHPANQSRHFHTSPNSILRRRASSNVILNPKENRKSHCTVSIIGIHLIPKIATIRFILSRSLFTIDQYALSVSVITRNTSSFPFSVRSSDSCFSRNFRIEGLTMSSRGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDIVWNSPGSQGIFDVIKGSSFRVIVENEEQVELSFTRMWDPSLEGKVVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIADNRQRLMPLPDDRLSGRCQTLGFPEAVLLTHPKNPEHKDEVDDKYQYSCENKDLKVHGWISTNPPIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRNGEPWKKVFGPVFLYLNSTKAGDDPFWLWEDAKIQMMTEVQSWPYSFPASDDFPKLDQRGTISGRLLVFDRYMSRDYLPAGGAFVGLSAPGEIGSWQRECKGYQFWTRADDRGYFIINHVHIGQYNLYAWVPGFIGDYRCDALINISQGSSIELGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPLHINKLFVNHPERFRQYGLWERYAELYPDEDLVYTVGTSDYSKDWFFAQVPRKTNDNSHQGTTWKIAFKLDRVDRKNRYMLRVAIASATLAELQIRVNDPSSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGLHLVEGDNAIFFTQPRCTSPFQGIILICSLVRVNSKLAVVMENGIIAVTISNPMGFVTGIQYHGIENLLDVTNPEDDRGYWDVVWNTAGAKGTKGMFDRIEATDFKVIVQNDEQIELSFSRAYNSSSGDDVVPLNVDKRFVILRNSSGFYSYAIYEHLKDWPAFNIDNTRIAFKPRKDKFRYMVVADERQRFMPLPDDRKPPRGVALEYPEAVLLVDPIEPEFKGEVDDKYQYGCESKDTRVHGWISNDPPIGIWQITASEEYRSGGPLKQVLTSHVGPTSLTIHSDFGKMLKNRYVSNESIPASGAYVGLALPGELGSWQTESKGYQFWSRADENGHFTLENVLSGNYSLNGWVYNFISEYQYDAFITVTPGSDIDVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPSPKFINKLFVNHSDKFRQYGLWERYAELYPKEDLVYTVNQSDYKKDWFFAQVNRKIDDNNTYVGTTWKIEFKIDSPDTHGTYKLRLALATAHAAELQVRVNDAQTVTPLFTTGVIGKDNTIARHGIHGLYRFYSVDIPGSELVAGNNTIFLTQTNDHGPFVGIMYDYIRLEGPLTS 1270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7163961 7176107 + Carg00420-RA Car04g01242 146667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01242 1270 Pfam Polysaccharide lyase family 4, domain II 989 1061 IPR029413 -
Car04g01242 1270 Pfam Polysaccharide lyase family 4, domain II 442 513 IPR029413 -
Car04g01242 1270 Pfam Rhamnogalacturonate lyase family 115 287 IPR010325 -
Car04g01242 1270 Pfam Rhamnogalacturonate lyase family 720 911 IPR010325 -
Car04g01242 1270 Pfam Polysaccharide lyase family 4, domain III 1075 1264 IPR029411 -
Car04g01242 1270 Pfam Polysaccharide lyase family 4, domain III 527 709 IPR029411 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01242 Car-Chr4:7163961 Car12g00194 Car-Chr12:1225621 3.29E-106 dispersed
Car04g01242 Car-Chr4:7163961 Car09g00530 Car-Chr9:2983546 2.67E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01242 K18195 - csv:101203947 1137.09