Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01251 ATGGCCAGACCTCAAAGGCAATATCGTGGCGTAAGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCATCCTTCGTTGAAGACGAGGATTTGGCTTGGAACATTTGAAACGGCGGAGGATGCAGCTAGGGCTTATGATGAAGCGGCGAGATTAATGTGTGGACCAAACGCAAGAACGAATTTCCCGTACAATCCGAACACGATTCAGTCGTCGAATTCCAAGATCTTGTCGGCCAATTTGACTGCGAAATTGCATAGATGTTATATGGCTTCTTTGCAGATTAGTAACCAGGAGTTCAAAAGAGAACTTCCGCCGCCGTTTGCGGCGGCGTCTTATGCCGATGCGGCGAGATCGATGGTGGAGGAGAATCGACCAACGGCGCCCGAGGCGGCGGAGCAAGAGGAACTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA 492 48.37 MARPQRQYRGVRQRHWGSWVSEIRHPSLKTRIWLGTFETAEDAARAYDEAARLMCGPNARTNFPYNPNTIQSSNSKILSANLTAKLHRCYMASLQISNQEFKRELPPPFAAASYADAARSMVEENRPTAPEAAEQEELKLLEDDHIEQMIEELLYYGSMEFCL 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7250674 7251244 - Carg00429-RA Car04g01251 146676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01251 163 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Car04g01251 163 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00150 Car-Chr1:768968 Car04g01251 Car-Chr4:7250674 1.24E-50 dispersed
Car04g01251 Car-Chr4:7250674 Car05g00302 Car-Chr5:1680751 1.21E-61 dispersed
Car04g01272 Car-Chr4:7380535 Car04g01251 Car-Chr4:7250674 2.26E-30 dispersed
Car12g00340 Car-Chr12:2145444 Car04g01251 Car-Chr4:7250674 1.40E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3339 PF00847 AP2 2.30E-12 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01251 - - csv:101216179 224.172