Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01268 ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGTATTCGCCATGATTCCGACAATGGGCCTAAACCTCTGAAGAACATAAACAGCCAAATATGTCAAATATGCGGCGACACCGTTGGTCTTACGGCCTCCGGTGATATCTTTGTCGCTTGCAACGAATGCGCCTTTCCTGTTTGTCGTCCGTGTTACGAGTACGAGAGGAAAGACGGCAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGTAGTCCCCGAGTCGATGGCGATGATGATGAGGATGACGTGGATGATATCGAGAACGAGTTTAAATACACCCAAGGAAGTAGCAAGACAAAACAACAATGGCATGGGGAAGATACTGAGCTATCAACTTCTACAAGACATGAATCTCAACAGCCTATACCACTCCTTACCAATGGCCAATCAGTTTCGAGTGAAATTCCTTATGCAACACCCGACAATCAATCAGTACGAACGACATCCGGTTCGTTGGGTCCTCCAGACAAGCATTTGCACTCACATCCTTACGTCGACCCTCGACAGCCAGTTCCTGTGAGAATTGTTGACCCATCAAAGGATTTGAACTCTTATGGCCTTGGGAATGTTGATTGGAAGGAAAGGGTGGAAGGTTGGAAATTGAAACAAGAGAAGAACATAATGCAGATGACAAGTAGATACTCAGAAGGGAAGGGGGACTTGGAAGGCACTGGCTCCAATGGAGAAGAACTTCAAATGGCGGATGATGCTAGACAACCTCTAAGTCGTGTGGTTCCGATTCCGTCTTCTCACTTGACCCCGTATCGTGTCGTGATCATACTTCGACTTATTATTCTCGGCTTCTTCTTACAGTACCGTTTGACGCACCCGGTGAAAGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCGCTATCCTGGCTTTTGGATCAGTTCCCGAAATGGTCTCCGGTTAATCGTGAAACTTTCCTCGAGCGACTTGCATTAAGATACGATCGTGAAGGAGAACCGTCGCAGTTAGCTCCTGTTGATGTTTTTGTTAGTACTGTGGATCCTCTCAAAGAGCCTCCACTTGTCACGGCTAACACCGTGCTTTCCATCCTTGCTGTGGACTACCCTGTCGACAAAGTCTCCTGCTATGTGTCGGATGATGGTTCGGCAATGCTTACGTTTGAATCGCTCTCTGAAACTGCAGAGTTTGCAAGGAAGTGGGTGCCTTTTTGCAAGAAGCATAGCATTGAACCAAGGGCCCCGGAGTTTTATTTTGCTCAAAAGATAGATTACTTAAAGGACAAGATTAAACCTTCGTTCGTAAAAGAGCGTCGAGCGATGAAGAGGGAGTATGAAGAATTCAAGATCCGAATCAATGCACTTGTTGCCAAAGCACAAAAGATGCCTGAGGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGTCACAGTGGAGGTCTCGATACCGATGGCAATGAACTACCTAGACTTGTTTATGTTTCTCGTGAGAAACGTCCCGGCTTCCAGCACCACAAAAAAGCTGGAGCTATGAATGCATTGATCCGAGTTTCTGCCGTGCTAACTAACGGAGCGTATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCTCTGAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTACGTACAGTTCCCACAACGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGTAACATTGTCTTTTTCGACATAAACTTGAAAGGGTTGGATGGTCTCCAGGGTCCTGTCTATGTCGGAACTGGTTGCTGTTTCAATCGACAAGCTTTATACGGTTACGATCCAGTCCTGACCGAGGCAGACTTGGAACCGAACATTATCATTAAGAGTTGTTGTGGTTCGAGAAAGAAGCACCGGAATAAGAAGTACGTCGACAAGAAGAGGGCTGCAAAAAGGACTGAGTCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGCGTTGAAGGATATGATGACGAGAGCTCACTCCTGATGTCTCAGAAGCGTATAGAAAAACGCTTCGGCCAATCTCCGGTTTTCATTGCAGCCACTTTCATGGAACAGGGAGGTATACCACCTTCAACCAACCCTGCAACACTGCTAAAGGAAGCAATTCATGTCATCAGTTGTGGTTATGAAGACAAGACAGAATGGGGCAAGGAGATTGGGTGGATCTATGGTTCCGTGACAGAAGATATTTTGACGGGGTTTAAGATGCATGCTCGTGGTTGGATTTCGATATATTGTATGCCTCCACGCCCGGCGTTCAAGGGATCTGCTCCGATCAATCTTTCGGATCGATTGAACCAAGTGCTTCGATGGGCTTTGGGTTCGATAGAGATTTTGCTCAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTAAAGCTTTTGGAGAGAATAGCATACATCAATACCATTGTCTACCCTATCACCTCAATTCCACTTCTTGCATACTGTACGCTTCCAGCCTTCTGTCTTTTGACTGGAAAGTTCATCATTCCTGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATTTTCGCCACCGGTATTCTCGAGCTTAGATGGAGCGGAGTTAGCATTGAAGACTGGTGGAGAAACGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTTGCTGTCTTCCAAGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACCGTCACGTCGAAGGCCAGCGACGATGACGGGGATTTTGCAGAGCTTTACGTGTTCAAATGGACTTCCCTCCTCATCCCTCCCACCACTGTCCTTATTATAAACATGGTTGGCATAGTGGCTGGTGTTTCATATGCCATTAACAGTGGTTACCAATCTTGGGGCCCTCTCTTTGGGAAGCTGTTCTTTGCATTATGGGTCATCGTCCATTTATATCCTTTCCTAAAGGGTTTATTAGGGAGGCAAAACCGAACGCCTACCATTGTCATCGTCTGGTCGATTCTCCTTGCTTCGATATTCTCCTTGCTTTGGGTGCGAATCGATCCGTTCACCTCTGCGTCAACGAAGGCTGCCAATGGTCAATGTGGTATCAATTGCTAG 3249 46.04 MEANAGLVAGSYKRNELVRIRHDSDNGPKPLKNINSQICQICGDTVGLTASGDIFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFKYTQGSSKTKQQWHGEDTELSTSTRHESQQPIPLLTNGQSVSSEIPYATPDNQSVRTTSGSLGPPDKHLHSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNIMQMTSRYSEGKGDLEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFESLSETAEFARKWVPFCKKHSIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKHRNKKYVDKKRAAKRTESTIPIFNMEDIEEGVEGYDDESSLLMSQKRIEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLLAYCTLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIINMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7351698 7360871 + Carg00446-RA Car04g01268 146693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01268 1082 MobiDBLite consensus disorder prediction 74 194 - -
Car04g01268 1082 Coils Coil 456 476 - -
Car04g01268 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Car04g01268 1082 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Car04g01268 1082 MobiDBLite consensus disorder prediction 137 174 - -
Car04g01268 1082 Pfam Cellulose synthase 358 1073 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00866 Car-Chr2:6208790 Car04g01268 Car-Chr4:7351698 0 dispersed
Car03g00067 Car-Chr3:811642 Car04g01268 Car-Chr4:7351698 0 dispersed
Car04g01268 Car-Chr4:7351698 Car10g00420 Car-Chr10:2110337 0 dispersed
Car08g00439 Car-Chr8:2852979 Car04g01268 Car-Chr4:7351698 0 dispersed
Car18g00403 Car-Chr18:2468004 Car04g01268 Car-Chr4:7351698 1.32E-10 dispersed
Car04g01268 Car-Chr4:7351698 Car09g00410 Car-Chr9:2268869 1.44E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01268 K10999 - csv:101205724 2156.72