Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01272 ATGGTTTATTCGAGGAAGTTCAGGGGAGTTAGGCAGCGGCAGTGGGGCTCGTGGGTGTCAGAAATCCGCCACCCATTGCTGAAAAGAAGGGTGTGGCTAGGGACATTCGACACCGCAGAGGATGCAGCACGAGCATATGATCAAGCATCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCGAAAGACCGATCTGAAGAAGCCAGCCATGGCCATGGGGCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGGAAGTGCTGCAAGAACCCTTCTCCCTCCTTGACATGCCTGCGACTCGACAGTGACAATGCCCACATCGGCGTCTGGCAGAAGCGTGCAGGCACTCGAGCAGCCTCCGATTGGGTCATGAGGATTGAGTTAGGAAAGAAGGAGACACCGTCGCCGTCGATGTCCCTGTCCCCGTTGCCCGAACCTGCAAGCCAGGAAGCTGAAGGCCGCCAAAATGGGATTGATGAAGAAGACAGAATTGCAATGCAAATGATCGAAGAGTTGCTGAGTTGGAACTGCCCTCTTCCTTCAACTTCAAGCTAG 585 53.5 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKTNFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIEELLSWNCPLPSTSS 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7380535 7381667 - Carg00451-RA Car04g01272 146697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01272 194 MobiDBLite consensus disorder prediction 142 170 - -
Car04g01272 194 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Car04g01272 194 MobiDBLite consensus disorder prediction 58 83 - -
Car04g01272 194 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01272 Car-Chr4:7380535 Car04g01251 Car-Chr4:7250674 2.26E-30 dispersed
Car11g00423 Car-Chr11:2374062 Car04g01272 Car-Chr4:7380535 1.87E-72 wgd
Car04g01272 Car-Chr4:7380535 Car05g01210 Car-Chr5:11426074 1.09E-71 wgd
Car04g01272 Car-Chr4:7380535 Car09g00404 Car-Chr9:2243837 5.61E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3341 PF00847 AP2 1.80E-12 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01272 - - mcha:111006480 350.132