Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01296 ATGAGTACGGAAAACGTTGCTTTTGAAGTTGAAGAGTGCTCTGTCCGGATCACAAGGGCACGGGCAAAAGAGCTTAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCTTCTGGAGTTCAGAAGCCACTTCTACGAGCTAACTCAAAAAGAATGGCATCTGATGATATTAAGATTTGTTCAATCTCTTCCAATGGCCTTCCTATTAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGGGTCTGATAAGAATTGCGGCAATGCTTCTAATGTTCGGGGTGCCAAACCAACTAGAAGAGTTTCTGCGAAGGCTAAGGAAAATGCACCTTTAAATGTTTCTGTAGGAGCAGAAGAAGATGCAAACACAAGATTAGCGGAGGATTTATCTAAAGTAAGGGTGGTAGAATCACAAGAGGTCTCTTCACGAGGAACTTCAGACAAAAAAGAGAGAACAGTGCAAGCCATGTGTCCCAATAGCAGAGACTGTGGAGTTTCAGATATTACTCTCTCTGTATCTTCAGATGAATCTGTCCCTCAGCCAAATGAAAAAAATATGGCACCTGAACGATCGGCAGCATCTAAGGATAGAGGCATTATAAACATTGATTCGGACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGCGTGGCGGAGCTTGATCAAAGGACCTCAACAAACTATATGGAACAGTTGCAGCAAGATATCACTGAAAAAATGCGAGGAATACTGATTGATTGGATTGTAGAGGTCACTGAAGAATATAAGCTGGTTCCAGATACACTCTATCTCACTGTGAATATTATTGATCGGTTTCTCTCGCAAAATCATATGGAGAAAAAACGTCTGCAACTTTTAGGTGTTGCATGTATGCTAATTGCATCGAAATATGAGGAGATCTGTGCACCGAGAGTGGAAGATTTCTGCTTCATTACTGATAATACTTACACAAAAGGAGAGGTAGTAGAAATGGAGAGTGAAGTTCTGAACCAACTGCATTTTCGTCTATCTGTTCCCACTGTAAAGACATTTCTAAGGAGATTCATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCACTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGAGTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCAGCCGTATTTCTTGCGAGATGGACACTTGACCAATCAGATCATCCTTGGAATCCAACTCTAGAGCACTATACATGTTACAACGCTTCTGAGCTGAAAACTGTAGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGGTTCCTCGCTAAATGCCATACGTGAGAAGTATAAACACCCCAAGTTCAAATGCGTAGCGAAACTAACATCTACTCGATCGGTTCTATCACTATTCTGA 1446 41.49 MSTENVAFEVEECSVRITRARAKELSESGGILCSSKSSGVQKPLLRANSKRMASDDIKICSISSNGLPIKRRAVLKDVTNISTKGSDKNCGNASNVRGAKPTRRVSAKAKENAPLNVSVGAEEDANTRLAEDLSKVRVVESQEVSSRGTSDKKERTVQAMCPNSRDCGVSDITLSVSSDESVPQPNEKNMAPERSAASKDRGIINIDSDSKCLQSCSIYAPDIYDRIRVAELDQRTSTNYMEQLQQDITEKMRGILIDWIVEVTEEYKLVPDTLYLTVNIIDRFLSQNHMEKKRLQLLGVACMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMESEVLNQLHFRLSVPTVKTFLRRFIQSAHASYKVPCTELEFLANYLAELSLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTCYNASELKTVVLALQDLQLNTSGSSLNAIREKYKHPKFKCVAKLTSTRSVLSLF 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7500349 7505909 + Carg00475-RA Car04g01296 146721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01296 481 MobiDBLite consensus disorder prediction 176 198 - -
Car04g01296 481 MobiDBLite consensus disorder prediction 86 111 - -
Car04g01296 481 Pfam Cyclin, N-terminal domain 222 349 IPR006671 -
Car04g01296 481 Pfam Cyclin, C-terminal domain 351 473 IPR004367 -
Car04g01296 481 ProSitePatterns Cyclins signature. 253 284 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01581 Car-Chr1:13104446 Car04g01296 Car-Chr4:7500349 2.40E-60 dispersed
Car04g00086 Car-Chr4:455024 Car04g01296 Car-Chr4:7500349 3.86E-19 dispersed
Car04g01296 Car-Chr4:7500349 Car17g00774 Car-Chr17:6828462 2.55E-143 dispersed
Car11g01125 Car-Chr11:8994451 Car04g01296 Car-Chr4:7500349 3.79E-78 dispersed
Car12g00289 Car-Chr12:1889539 Car04g01296 Car-Chr4:7500349 2.45E-133 wgd
Car04g01296 Car-Chr4:7500349 Car09g00418 Car-Chr9:2316309 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01296 K06627 - csv:101204275 775.007