Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01310 ATGAGAGCTTCAAATGATCATTTTCTCATCTGGATCCTTTGTGCTCTGTGCTTATCATCATCTCTTTCATCAGGATTCACTCCCGATGATAATTTTCTGATCGATTGTGGATCATCCTCCAATAGTACGGTGGGAGATCGTCTATTTATATCTGATGATCTTTCATCTAATATTCTTTCCAACCCAAATGGGAAATCTCTTTCCACTACAAGCAACGTATCTAGTTCATCTCCATTGTTCTTATTCTCATCTCTCCTTCGAACTGCAAAAATATTTGAAACAACTTCCAAATACAACTTCAAAATAAAGAAGCAGGGCAGGCACTGGATCCGCCTCTACTTTTACCCTTTTGTTTCTGGAAACATGGACTTGAGTTTGGCTAGATTTTCAGTTTCTGCTCAAAATATCACCCTTCTTAAAGAATTTCAGATGGATAGTGGCTCGGTAATCAAGGAATATTCTCTGAATGTTACTTCCAGTAATCTTGTTCTTACATTCACTCCCATGGTGAATTCATTTGCCTTCATCAATGCTTTGGAAGTTGTTTCTGTCCCTAATGAACTGATTCCCTCGAGTGTTCCCACTGTTGAGAAGCTTGTAAGAAGTTTGGGGAACAGGGCGTTGGAGACTGTTGCTAGAGTGAATATGGGCAATGAAACTGTGTCTCCGAATGATGATACTCTATCACGCCTTTGGGTTGCGGATGGGCCATTCTTGATGCATAATGATCAGGTCATCGTTGGAAAGTTTGTGTCAAATCTTACAAAAGTGAATATGACAAGAGACTCTGAAATTATGGCCCCCCGTTCTGTATATGGAACAGCAACTCAATTAGGAGTTGATGCGGATGCGAATGCTAATGTTAATGTATCGTGGTCATTCGACGTCGATCCTGGCTATGAATATCTGATTCGTTATCATTTCTGTGATATTGTAGATCTTTCTCTCGGATCGCTGTCCTTCAATGTTTATGTTAACTCATGGAAGGTTAAAGATCATCTTGATATTGGTAAGCTCACTTCGGGCATCCTAGGTGCACCCTATGTCCTGGACACCATAGCCAGTCCAATTGACAGCTCTAAGTTCAAAATCAGTGTTGGCCCTAGCAACTTTCATGAGTACTCAGCTGCAATTCTTAATGGGCTCGAGATCATGAAAATAAGCAATTCTCGGGGGAGCCTTGACGAACCCTCATTTGATTTAGACTCGAAGAAAGTTTCCAATGTGAAAGTTGGTCTTATATCAGGCTTGGTTGCTGGACTGCTTATTGCTGCTGTTTTGGCCACTCTTGTCATTGTGTTGTGCAGAAGAAGAAGGCGATTGGCGCTCGTTCGCCACTCGAAGGAAGAGGACAATTATGGTGTGAATGGAAGAGAAAGCAAGTATATCATTGGATCTGTTGGCTTTTCGAGCTCGAAAATTGGTTATCGATATCCTCTTGCAGCTATTCTGGAAGCTACAGATCATTTTAGTGAAAGTTTAGCCATTGGCCTTGGAGGGTTTGGGAAAGTTTACAAGGGAATGTTAAGGGACAACACAGAAGTGGCAGTGAAAAGAGGGACTTCGAAATCTCAGCAGGGTCTTGCAGAGTTTCGAACCGAAATCGAGATGCTATCCCAATTTCGCCACCGTCATTTGGTATCTCTGATCGGGTACTGTGATGAGCAAGATGAGATGATTATAATTTATGAGTACATGGAAAAAGGGACCCTCAAAGACCATTTGTATGGATCAGAACTTCCAAGTTTAAGCTGGAAACAAAGGCTTGAGGTCTGCATTGGCTCAGCTAGAGGACTTCACTACCTTCACACTGGCTCCACAAAGGCAATCATCCACAGAGATGTCAAAACTGCAAACATTCTTCTAGATCAAAACTACATGGCCAAAGTTGCAGACTTCGGACTCTCAAAGATCGGCCCTGAATTTGACAAGACTCATGTCAGTACAGCGGTGAAAGGAAGCTTTGGCTATCTCGATCCCGAGTACTTAACGACGCAGCAACTAACCGAAAAATCAGATGTGTACTCTTTCGGCGTGGTAATGTTTGAAATCCTTTGCGGTAGGCCTGTCATTGATCCATCTCTTCCAAGGGAGAAGGTGAATTTAATTGAATGGGTGATGAGGAAGGGGAGAGATCAGCTGGAGGCGATCGTTGATGCTTGTATCGTCGAGGAAGTCGAGCTGGAATCTCTAAGAAAATACATAGAGACAGCAGAGAAATGCTTGGCAGAATGCGGGATGGATCGTCCAACCATGGGAAACATTCTGTGGAATCTGGAGTGTGCACTCCAACTCCAAGGGAATGAAAGATCTCTTCATTTAAAGGAATCGTCCTCACAAGCTGATCTTTCCAACAGTTGGGAGGCGAGTGTATCGACGACTCAATTCAGCACGGGAAGTGCTGTCGATATTGCCGGTGTTTCGATGAGTAAGGTATTTGCTCAAATGGTGAGGGAAGATATGAGATAG 2469 42.89 MRASNDHFLIWILCALCLSSSLSSGFTPDDNFLIDCGSSSNSTVGDRLFISDDLSSNILSNPNGKSLSTTSNVSSSSPLFLFSSLLRTAKIFETTSKYNFKIKKQGRHWIRLYFYPFVSGNMDLSLARFSVSAQNITLLKEFQMDSGSVIKEYSLNVTSSNLVLTFTPMVNSFAFINALEVVSVPNELIPSSVPTVEKLVRSLGNRALETVARVNMGNETVSPNDDTLSRLWVADGPFLMHNDQVIVGKFVSNLTKVNMTRDSEIMAPRSVYGTATQLGVDADANANVNVSWSFDVDPGYEYLIRYHFCDIVDLSLGSLSFNVYVNSWKVKDHLDIGKLTSGILGAPYVLDTIASPIDSSKFKISVGPSNFHEYSAAILNGLEIMKISNSRGSLDEPSFDLDSKKVSNVKVGLISGLVAGLLIAAVLATLVIVLCRRRRRLALVRHSKEEDNYGVNGRESKYIIGSVGFSSSKIGYRYPLAAILEATDHFSESLAIGLGGFGKVYKGMLRDNTEVAVKRGTSKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEQDEMIIIYEYMEKGTLKDHLYGSELPSLSWKQRLEVCIGSARGLHYLHTGSTKAIIHRDVKTANILLDQNYMAKVADFGLSKIGPEFDKTHVSTAVKGSFGYLDPEYLTTQQLTEKSDVYSFGVVMFEILCGRPVIDPSLPREKVNLIEWVMRKGRDQLEAIVDACIVEEVELESLRKYIETAEKCLAECGMDRPTMGNILWNLECALQLQGNERSLHLKESSSQADLSNSWEASVSTTQFSTGSAVDIAGVSMSKVFAQMVREDMR 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7613607 7616075 + Carg26901-RA Car04g01310 146735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01310 822 Pfam Malectin-like domain 34 387 IPR024788 -
Car04g01310 822 ProSiteProfiles Protein kinase domain profile. 490 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01310 822 Pfam Protein tyrosine and serine/threonine kinase 495 689 IPR001245 GO:0004672|GO:0006468
Car04g01310 822 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Car04g01310 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01310 Car-Chr4:7613607 Car01g01013 Car-Chr1:9662947 0 dispersed
Car04g00230 Car-Chr4:1279295 Car04g01310 Car-Chr4:7613607 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88804 PF12819 Malectin_like 5.60E-34 CL0202 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01310 - - csv:101203398 1298.88