Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01322 ATGGTATCAGAAACTTTGATGAAGATTGTATCACCTTGCTGGAAACCTTCTGTTGAAGGTGAAAATTCCAGCAGAGGTGGGGATGCGAGTGGGCGGGTTGATGGATTGTTATGGTACAAGGATTCTGGCCGCCATATTAATGGGGAATTCTCAATGGCGGTTATTCAGGCAAATAATTTGTTGGAAGATCGGAGCCAACTCGAGTCAGGGCCACTGAGCTCATTTGAATCAGGTCCCATTGGGACGTTCGTTGGAATCTATGATGGCCATGGAGGACCTGAAGCTGCAGAATTCATAAGTGATCGTCTGTTCAATAATATGAAGACTTTTCATGGTGCAGAATTTATTCCAGAAAATCGGGGAGTATCTGCTGAAATTATAAACAAAGCATTCTTGGAGACAGAGGAGGAATTTTTGTCTCTTGTAAAGAAACAATGGCTTAGTAAGCCTCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAAAACTCATAAAGAGGTTAAAGCCATCCAGTTGTCATCTGAGCACAATGCTAGTATTGAATCTGTGCGAGAGGAGTTGCACTCGTTGCATCCCGGTGATCCGCAGATCGTTGTGCTAAAGCACAAGGTGTGGCGCGTGAAGGGTGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACAGAGTTCAACCGAGAGCCTCTCTTGCCCAAGTTCAGATTACCAGAACCATTCCACAAGCCAATTCTTAAAGCCGAGCCTGCTATTGTAGTGCAGAAACTGTATCCGGAGGATCAGTTCCTTATCTTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGACATCGTCCATAGTTGTCCACGTAACGGGGTTGCAAGGAAACTGGTTAAAGCGGCTCTTCATGGAGCTGCAAAGAAAAGAGAAATGAGATACACAGACTTGAAGAAGATCGACCGCGGGGTAAGAAGGCATTTTCACGACGACATAACTGTTGTAGTATTGTTCCTGGATTCGCATTTGATTAGTCGAAGTCCGAGCTACGGACCAATGCTTTCAATCAGAGGAGGTTCTGGTATCCTGGCTAGATCGTAG 1170 44.27 MVSETLMKIVSPCWKPSVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSFESGPIGTFVGIYDGHGGPEAAEFISDRLFNNMKTFHGAEFIPENRGVSAEIINKAFLETEEEFLSLVKKQWLSKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPGDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGVARKLVKAALHGAAKKREMRYTDLKKIDRGVRRHFHDDITVVVLFLDSHLISRSPSYGPMLSIRGGSGILARS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7661186 7664295 + Carg02080-RA Car04g01322 146747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01322 389 Gene3D - 39 370 IPR036457 -
Car04g01322 389 PANTHER ALPHABET, ISOFORM E-RELATED 8 384 - -
Car04g01322 389 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Car04g01322 389 SUPERFAMILY PP2C-like 58 363 IPR036457 -
Car04g01322 389 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 384 - -
Car04g01322 389 ProSiteProfiles PPM-type phosphatase domain profile. 49 362 IPR001932 -
Car04g01322 389 Pfam Protein phosphatase 2C 82 329 IPR001932 -
Car04g01322 389 SMART PP2C_4 41 360 IPR001932 -
Car04g01322 389 CDD PP2Cc 50 362 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01322 Car-Chr4:7661186 Car14g00153 Car-Chr14:726511 0 dispersed
Car04g00236 Car-Chr4:1309674 Car04g01322 Car-Chr4:7661186 0 wgd
Car04g01322 Car-Chr4:7661186 Car06g00288 Car-Chr6:1617533 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01322 K01102 - csv:101220760 751.895