Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01331 ATGATGATGTTGAATCTTAATGATTCGATTATGAACCGTGACGAAGCGACGACGGATCGGATCGTAATGGAGGATTCGGAGACTTCGAATTCCTCCGTCGTTAATGCCGATGAGGTCTGCAACAGCAGAGATGAAGAGTCCTCTGTTTTAATCTTCGATATTCTCAAGAAGGAAAGTCCCGGCGGCGTTGGCGGCGGTCCAGTGCCTGAATTAGTGACCCAGGCGCTTTTCCCGGTTGCCGGTGGGTGGGGAGATTCTGGGTCTCCGATATTCAGGACCCAGTGGTTGAACCTGTCGCCGATGGCGGATTCTGGTGGCGGTGGAGGACAGCCGGAGATGAAAACTGTGCAGCCGAAACAACAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCAGAAGCTCGCAGTACCGTGGTGTTACGTTTTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGCGGGTTCGACACAGCCCATGCTGCAGCAAGGGCTTATGATCGAGCTGCTATAAAATTTAGGGGAGTCGATGCAGATATAAACTTCAATATAAGTGACTACGACGAAGATATGAAACAAACAAAGAATCTAAACAAAGAAGAGTTTGTGCATGTTCTACGTCGACAAAGTTCTGGAGTTTCTCGTGGAGGATCAAAGCTAAGAGGACTATCTGTTCAAAGATATGGACGATGGGAAACTCAAATGAATCAAATTATTGAAAAGAAGGGAACTGAGGAAAGATCCGAGACAACAGTGGAAGCAAGTAATGGAGGCAATGGACATAATCTTGATTTGAGCATTGGAGGAATTTTCAACTACCATTTTAGTAATTCTTCTCCAAAGCTCAACATTGAGAGACCAAAGAATGAAAACAATGGTTATGCACATGGAATGGGTGGACAACAACCTAATACTCCTCCTTCCGTGTTCTCTGGTTTTTACTCTGCTTTTTTACCACATAATCAGGAAAGAGGGAGAGAGACGAGAAACAAGGAGTCGACAGGTTGGAGATGGCAAACCGCGAGGTCGATAGAAGGAAATGTGAACGAAGAAAAGAAGAAGAATATAGAAAGCCATGGTTCCAAGAGTGCAGCATCATCAGGATTCTCTCCCTCTCATAATTTTGGTTCATTTTATGCCCAAAACAACACACCTCTCCACACCAATCACTGCCTTCCAACGCCTTACACCAATATTTCTTGA 1230 45.85 MMMLNLNDSIMNRDEATTDRIVMEDSETSNSSVVNADEVCNSRDEESSVLIFDILKKESPGGVGGGPVPELVTQALFPVAGGWGDSGSPIFRTQWLNLSPMADSGGGGGQPEMKTVQPKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKQTKNLNKEEFVHVLRRQSSGVSRGGSKLRGLSVQRYGRWETQMNQIIEKKGTEERSETTVEASNGGNGHNLDLSIGGIFNYHFSNSSPKLNIERPKNENNGYAHGMGGQQPNTPPSVFSGFYSAFLPHNQERGRETRNKESTGWRWQTARSIEGNVNEEKKKNIESHGSKSAASSGFSPSHNFGSFYAQNNTPLHTNHCLPTPYTNIS 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7718546 7720929 + Carg02071-RA Car04g01331 146756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01331 409 MobiDBLite consensus disorder prediction 101 137 - -
Car04g01331 409 MobiDBLite consensus disorder prediction 293 313 - -
Car04g01331 409 MobiDBLite consensus disorder prediction 331 378 - -
Car04g01331 409 Pfam AP2 domain 136 184 IPR001471 GO:0003700|GO:0006355
Car04g01331 409 ProSiteProfiles AP2/ERF domain profile. 136 192 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01331 Car-Chr4:7718546 Car07g00921 Car-Chr7:5119172 1.09E-09 dispersed
Car04g00246 Car-Chr4:1393292 Car04g01331 Car-Chr4:7718546 1.51E-19 transposed
Car04g00244 Car-Chr4:1361453 Car04g01331 Car-Chr4:7718546 6.58E-25 wgd
Car04g01331 Car-Chr4:7718546 Car06g00295 Car-Chr6:1651111 1.60E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3346 PF00847 AP2 5.50E-10 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01331 K09284 - csv:101204131 549.666