Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01337 ATGGCTTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTCCAAACCACCCCTTATCTTACTCCCCAATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACTTCTCAGCCGTCGTCTCCCCCGCCGCCTACGGTGATCCTCAGCCCATGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCATATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGTCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAAGTGGCTAATATGCAGCACCAACAAGCCAACTTATTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCGTCGACACTACCTGCTTCCTCGATGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGA 627 56.14 MAYLAKCTNAPSTPITVPNHPLSYSPISSSSAATTNFGSPPTSQPSSPPPPTVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQSPDPVWPPQLVDTTCFLDDAALSSPWEPLWT 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7754472 7755472 + Carg02065-RA Car04g01337 146762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01337 208 Pfam Lateral organ boundaries (LOB) domain 57 154 IPR004883 -
Car04g01337 208 Coils Coil 136 170 - -
Car04g01337 208 ProSiteProfiles LOB domain profile. 56 157 IPR004883 -
Car04g01337 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 40 190 - -
Car04g01337 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00485 Car-Chr1:2847884 Car04g01337 Car-Chr4:7754472 3.23E-72 dispersed
Car02g00632 Car-Chr2:4759375 Car04g01337 Car-Chr4:7754472 5.80E-73 dispersed
Car04g01337 Car-Chr4:7754472 Car20g00407 Car-Chr20:2301707 6.36E-75 dispersed
Car04g00252 Car-Chr4:1433576 Car04g01337 Car-Chr4:7754472 1.01E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3348 PF03195 LOB 6.00E-40 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01337 - - bhj:120081845 359.377