Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01351 ATGTCGAATTCCGATTCTGGCAACACCAATGGGGTCTCCAATGGCGCCGCCGTTGATACCCACAAAAACCAGCCTTCTTCAAATGGAGCCCTCGTCGTCAAAAAGCCCCCCTCCAAGGACCGCCACAGCAAGGTCGATGGTCGTGGCCGCCGCATCCGTATGCCCATCATATGCGCCGCTCGAGTATTCCAGTTGACTCGAGAGCTTGGTCATAAGTCCGATGGCCAGACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCCTCCATTATTGCCGCTACTGGCACCGGCACTACCCCGGCTAATTTCTCCTCCGTCTCTCTTTCCGTCAGAGGAAATGGCGGCTCTACTTCTCTCTCTTCCCCTTCTTCCACCACTTCAACTCTCTCCCTCTCTCGTCCCCAGGCTCTCTCGGGCCCCACGCCGTTTATTCTCGGCAAGCGCGTCCGGTCCGATGACGACGGCGGTAAGGACGATGGGGCGGGAGTGGGTCCGACTGGGCCAGGTGGGTACTGGGCGATTCCAGCAAGACCCGATTATGGGCAGGTGTGGAGTTTTGCCGCCGCGGCTCCCTCGGAAATGGTGGTTCAACCCGGGGGGATTTCTCAACAAGCGTCGTTGTTTGCCCAACCGCAGCAGCCGATTAGAGAAGCGTCGGCGGCGAGAGTGGGGAATTACCTTCCCAGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGCGGTGGTTCTGGCCGACGGGAAGATGACCCTCGCTGA 753 59.23 MSNSDSGNTNGVSNGAAVDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSTSLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGGKDDGAGVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQPQQPIREASAARVGNYLPSHLNLLASLSGGGGSGRREDDPR 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7823374 7824126 + Carg02051-RA Car04g01351 146776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01351 250 MobiDBLite consensus disorder prediction 110 169 - -
Car04g01351 250 Pfam TCP family transcription factor 38 124 IPR017887 -
Car04g01351 250 ProSiteProfiles TCP domain profile. 38 92 IPR017887 -
Car04g01351 250 MobiDBLite consensus disorder prediction 1 31 - -
Car04g01351 250 MobiDBLite consensus disorder prediction 110 136 - -
Car04g01351 250 MobiDBLite consensus disorder prediction 35 50 - -
Car04g01351 250 MobiDBLite consensus disorder prediction 1 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01351 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101206050 384.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01351 Car-Chr4:7823374 Car04g02171 Car-Chr4:17624847 1.31E-98 dispersed
Car18g00741 Car-Chr18:8490719 Car04g01351 Car-Chr4:7823374 2.90E-112 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car15g00738 . 31 253 TCP Transcription Factor Family AT5G23280 63.5 1.8e-65 246.5
Car04g02171 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 2.6e-64 242.7
Car04g01351 . 36 250 TCP Transcription Factor Family AT5G23280 61.4 9.7e-64 240.7
Car18g00741 . 33 230 TCP Transcription Factor Family AT5G23280 58.5 9.4e-59 224.2
Car17g00004 . 65 337 TCP Transcription Factor Family AT2G45680 52.2 7.9e-59 224.9
Car18g01068 CCT,ECH 58 148 TCP Transcription Factor Family AT3G47620 92.3 4.5e-41 166.4
Car04g01690 CCT,ECH 62 156 TCP Transcription Factor Family AT3G47620 88.7 5.0e-40 162.9
Car13g00957 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.3e-39 160.2
Car04g01863 . 140 222 TCP Transcription Factor Family AT3G47620 90.4 1.5e-36 151.4
Car04g01863 . 140 232 TCP Transcription Factor Family AT1G69690 82.8 1.7e-36 150.6
Car14g00666 . 1 319 TCP Transcription Factor Family AT3G27010 57.1 5.7e-61 231.9
Car11g01298 . 38 276 TCP Transcription Factor Family AT3G27010 56.7 6.7e-54 208.4
Car17g01312 . 42 259 TCP Transcription Factor Family AT3G27010 53.2 5.5e-48 188.7
Car15g00738 . 1 252 TCP Transcription Factor Family AT5G08330 60.9 2.4e-64 242.7
Car04g02171 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 7.9e-63 237.7
Car04g01351 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 1.3e-60 230.3
Car18g00741 . 10 228 TCP Transcription Factor Family AT5G08330 57.4 3.7e-60 228.8
Car11g00191 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 58.0 4.1e-39 159.5
Car20g00876 . 39 150 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3349 PF03634 TCP 3.60E-33 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01351 Car_Chr04 FPKM 4.90678 7.036761 8.250934 8.833202 9.720997 9.116961 9.186089 11.352509 12.270667 12.268427