Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01394 ATGGAAAACGTGGAGGAAACGAAGCCATCAGTTACAAACATTTGCCTTCCTGATGGCGTAACAGACACCGCTGAAGTTCAATTTTCAGAATTTTGTGAGAACGGATTACGTCTGGACGAAAATTATTGCAATCAAGCTTTGAAGTTATATAGAGAGACCAAGCACCTTTTGGTGGCAAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCAACCGATTTTGGTCCGCCTTTGTTTTGTATTCCGTGAAGAGGCTGAGAGATAAGAATTCAGAGAGTTCACATCAGGGATCTGAGAACAACAGCTTCACGTTATGCCACATATTGAGAGTTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGCTTCCTCAGTTTGTTGTAAAAGCTGGTCCAGTATTAAGTAATCTTTATGGTGCAGATTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTTGTTCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAATTCTTCTCCACCAGTGATGCTAATGTTGAAAAGCAGTCAGCTTTATCCTGTCCTACGGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTATTTTTGGCTCTTCGTGTACATTCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATATTCCAGTTCGTTTCAGAAAGTTCAACATTCTTGACTCGGAACGCTTTGTTAAGAAAGGTGGAAAAGGAGTGGATCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGTTGAACTGAGGGAAATAATGGATAAAGCAAATAGTTTGATAGAAGATATTTTGAAGAAGAAGCCGCGTTCGGCCTCTGAGTGTAATAGTAAAAGCTTGGAGAATATTGACACTGAGGGCTTGATATGCTTTGAAGGATTAATGGAGGAGTTATCTCTTTCATCCAGTTTAGAAATTCTTGAAAAGGACTATGAAGATGCAATTCATAATAAAGGTGAGCTCGATGAGCGGGTATTTGTTAACGATGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCTGCAGGTGCTGTTACAATGAGTGGCTTCAAGAGGAAGTTCGACTCAATGTGCTCACCTACAAGGACAATAACCAGTCCAATGTCACCACTTGGCTCTCCTGGTTCGCACGCCAATGGCACTCTTAATAGTGGCAACGCGAAACTTGCTGCCACGCCTGTTAGCACAGCCATGACAACAGCAAAGTGGCTCAGAACGGTTATTTCTCCACTTCCAGCAAAACCTTCGGCGGAGATGGAGCGCTTTTTAGCCTCATGTGATAGGGATGTAACTAATGATGTCGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGCGCTCTTGGAGAGCGTTGTATAGCTGGAAATTTACAAAGTGCGAACCTCATGGATAACATCTGGGCAGAACAGCGGCGACTAGAAGCATTGAAGTTATATTATAGAGTTTTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTCACCAATTTGACTTCTTTGCTGACTAATGAGAGGTTCCATAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCGACTCATAAAACTGTTACGATGTTGTTTCCTGCTGTATTGGAGCGAACTGGAATAACTGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTTATTAGACATGAAGAGTCGCTTCCTAGAGAGCTGAGGCGACATCTTAATTCTTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAGAAAGGTTCGTCAATGTATAACTCCCTGATTGTTGCTAAACCTGCCCTTGCTGCAGAAATTAACCGTTTGGGTTTACTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAATTTTTCTGGTATTGGGGTATCAACCATGGCTAATTTGCAGAAGCATGAGAGTTTGCCAGGTCAAAATGGGCATATAAGGTCACCCAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCTTTTACTTCTCCAGTGAAGGACCGACTCCTGGCTTTCAGTAATATCAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCCGGAGGTGGTGGTGAAACGTGCGCTGAAACTGGAATTAACATATTTTTTAGCAAGATCACCAAGTTGGCTGCTGTTAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACGGATACTCGGTCAAAAAACATCACTATTATTTAATCGTCACATCGACCAGATAATTCTTTGTTGTTTCTATGGTGTCGCGAAGATCTCTCAATTGAGCCTCACGTTTAAGGAAATCATATACAACTACAGGAAGCAACCGCAATGCAAACCTCAAATCTTCCGAAATGTGTTTGTTGATTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCACGTGGATATAATTACGTTCTACAATGAAATATTTATCCCTTCTATAAAACCTTTGCTCGTTGAGATTGGCCCAGCTGCATCAACCACGAAAACTGACAGAGTTCCTCAAGTCAACAACAACAACAGCAATGCACCGTGCCCGGGATCACCTAAGATATCGCATTTTCCAAGTCTTCCTGACATGTCTCCGAAGAAAGTATCTTCAGTACATAATGTCTATGTCTCTCCACTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCAAAAAGCTATTACGCTTGTGTCGGGGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATAAACAACCGTTTGAATAGTACACCACGGAAACTCCGAGGCACACTAAATTTTGACGACGCGGACGTTGGTTTGGTGAGTGATTCCCTGGTGGCGAACAGCCTTTACCCACAAAATGGAAGTTGTGGATCATCCTCAGGTGCACCTATTAAATCTGAACAGCCTGATTCTTAG 3075 42.28 MENVEETKPSVTNICLPDGVTDTAEVQFSEFCENGLRLDENYCNQALKLYRETKHLLVANISAIGSGIPEEANRFWSAFVLYSVKRLRDKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTSDANVEKQSALSCPTGYLSDYHRFGWLLFLALRVHSFSRFKDLVTCTNGLVSILAILILHIPVRFRKFNILDSERFVKKGGKGVDLLGSLCNVYDTSEVELREIMDKANSLIEDILKKKPRSASECNSKSLENIDTEGLICFEGLMEELSLSSSLEILEKDYEDAIHNKGELDERVFVNDEDSLLGSGSLSAGAVTMSGFKRKFDSMCSPTRTITSPMSPLGSPGSHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSTMANLQKHESLPGQNGHIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQRILGQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFKEIIYNYRKQPQCKPQIFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSIKPLLVEIGPAASTTKTDRVPQVNNNNSNAPCPGSPKISHFPSLPDMSPKKVSSVHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNSTPRKLRGTLNFDDADVGLVSDSLVANSLYPQNGSCGSSSGAPIKSEQPDS 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8085227 8092281 + Carg02007-RA Car04g01394 146819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01394 1024 Pfam Retinoblastoma-associated protein A domain 418 619 IPR002720 GO:0005634|GO:0051726
Car04g01394 1024 Pfam Retinoblastoma-associated protein B domain 743 870 IPR002719 GO:0005634|GO:0051726
Car04g01394 1024 Coils Coil 331 351 - -
Car04g01394 1024 MobiDBLite consensus disorder prediction 884 903 - -
Car04g01394 1024 Pfam Domain of unknown function (DUF3452) 97 236 IPR024599 -
Car04g01394 1024 MobiDBLite consensus disorder prediction 884 902 - -
Car04g01394 1024 MobiDBLite consensus disorder prediction 1005 1024 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00779 Car-Chr18:8791322 Car04g01394 Car-Chr4:8085227 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3354 PF01858 RB_A 4.00E-64 CL0065 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01394 K04681 - csv:101219810 1847.79