Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01398 ATGACTGATGTCAGTCCAAGGACTGATATCTCTACCGACGTCGACACAGATGACAAAAACCAGAGGCTCGATATGGTTCAGTGGAACACGGTGGCTTCTGATTCGAGTGATAGAACGAAAGATAAGTCCGATCAGAAGACTCTACGTAGGCTCGCGCAGAATCGTGAAGCTGCCCGAAAAAGCCGACTGCGAAAAAAAGCATATGTCCAACAGCTAGAGAGCAGTCGTTTAAAGTTGACACAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAGTGTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATTACTGGAAATGGGGCCATGGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTGAGAGCAGCAGTGAACTCTCATGCAAGTGATACTGAACTCCGAATGGTTGTTGATGGCGTCTTGGCTCATTACGACGAGGTTTTTCGGCTAAAGGGCATCGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACTCCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCGGAGCTCCTAAAGCTTCTTGTCAATCAATTAGAGCCCCTAACAGAACAGCAGTTCATGGGCATATCCAACTTGCAGCAGTCTTCACAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCATTGCAACAGTCTTTGGCCGAGACGTTGTCTAGCGGATCTCTTGGCTCCTCGAACACATCTGGCAATGTGGCAAACTATATGGGTCAAATGGCCACAGCCATGGGCAAATTTGGGACTCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGGCAACAAACACTACAACAAATGCATCGGATATTGACAACTCGTCAGTCGGCTCGTGCACTTCTTGCAATTCATGATTACTTCTCCAGACTACGAGCCCTTAGTTCACTGTGGCTTGCTCGCCCAAAAGAGTGA 996 47.59 MTDVSPRTDISTDVDTDDKNQRLDMVQWNTVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHSITGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMVVDGVLAHYDEVFRLKGIAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQFMGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNTSGNVANYMGQMATAMGKFGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8104388 8109461 - Carg02003-RA Car04g01398 146823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01398 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 44 88 IPR004827 GO:0003700|GO:0006355
Car04g01398 331 MobiDBLite consensus disorder prediction 1 47 - -
Car04g01398 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 49 64 IPR004827 GO:0003700|GO:0006355
Car04g01398 331 Coils Coil 122 142 - -
Car04g01398 331 ProSiteProfiles DOG1 domain profile. 111 328 IPR025422 GO:0006351|GO:0043565
Car04g01398 331 Coils Coil 65 92 - -
Car04g01398 331 Pfam Seed dormancy control 128 203 IPR025422 GO:0006351|GO:0043565
Car04g01398 331 Pfam Basic region leucine zipper 42 88 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01398 Car-Chr4:8104388 Car12g00121 Car-Chr12:640069 0 dispersed
Car06g00014 Car-Chr6:153793 Car04g01398 Car-Chr4:8104388 0 transposed
Car14g00465 Car-Chr14:2438490 Car04g01398 Car-Chr4:8104388 0 transposed
Car18g00784 Car-Chr18:8837146 Car04g01398 Car-Chr4:8104388 2.11E-62 transposed
Car18g00783 Car-Chr18:8834948 Car04g01398 Car-Chr4:8104388 1.69E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3355 PF14144 DOG1 1.00E-32 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01398 K14431 - csv:101216885 583.563