Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01446 ATGGCGAAAGACGACGCGACGGCGCCGAGAGGGTTCTCAGGCAAGGACTACCACGACCCTCCACCGGCTCCGCTGTTCGACGCGGCGGAGCTCGGCAAGTGGTCTTTTTACAGGGCCATCATTGCCGAGTTCATCGCTACTCTTCTCTTTCTCTATGTCACCATCTTGACTGTGATTGGCTACAGTAGCCAGACCGACACTGACAAACCCGGCGCCGACGCTTGCGACGGCGTTGGGATCCTCGGCATCGCTTGGGCCTTTGGCGGCATGATCTTCGTCCTTGTCTACTGCACCGCCGGCATTTCAGGTGGGCACATCAACCCGGCGGTGACATTCGGGCTATTCTTAGCCCGGAAGGTGTCGTTGGTGCGGGCAGTGGCGTACATTGTGGCTCAGTGCTTAGGGGCCGTATGCGGGACGGGGCTAGTGAAAGCGTTCCAAAAGGCCTACTACCACAAGTACGGCGGCGGTGCGAACCAACTTGCCCTCGGCTACTCTAAAGGCACAGGCTTGGGGGCTGAAATCGTCGGTACATTCATCTTGGTCTACACCGTCTTCTCCGCCACTGATCCCAAGCGAAGCGCCAGAGACTCCCATGTCCCTGTATTGGCTCCACTCCCAATTGGGTTCGCTGTGTTTATGGTTCACTTGGCCACGATCCCCATCACCGGCACCGGCATCAACCCCGCTAGAAGCTTCGGCCCGGCTGTTATCTTGAACCATGAAAAACCGTGGAATGATCAATGGATATTTTGGGTTGGGCCATTCGTGGGAGCCGCCATCGCAGCCTTCTACCACCAGTTCATTTTGAGGGCCGGCGCCGTCAAGGCTCTCGGGTCTTTCAGGAGCAGCCCATCCGTTTGA 864 57.99 MAKDDATAPRGFSGKDYHDPPPAPLFDAAELGKWSFYRAIIAEFIATLLFLYVTILTVIGYSSQTDTDKPGADACDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYIVAQCLGAVCGTGLVKAFQKAYYHKYGGGANQLALGYSKGTGLGAEIVGTFILVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVILNHEKPWNDQWIFWVGPFVGAAIAAFYHQFILRAGAVKALGSFRSSPSV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8395801 8398112 - Carg01955-RA Car04g01446 146871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01446 287 TIGRFAM MIP: MIP family channel proteins 42 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g01446 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Car04g01446 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g01446 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g01446 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g01446 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g01446 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g01446 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g01446 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g01446 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Car04g01446 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Car04g01446 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 284 IPR034294 -
Car04g01446 287 CDD MIP 38 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g01446 287 PANTHER AQUAPORIN PIP2-4-RELATED 10 284 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01446 Car04g02491 CCT
Car04g01446 Car04g02491 ECH
Car04g02491 Car04g01446 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01446 Car-Chr4:8395801 Car08g00606 Car-Chr8:3926839 1.66E-40 dispersed
Car03g01114 Car-Chr3:9045777 Car04g01446 Car-Chr4:8395801 4.25E-170 transposed
Car16g00627 Car-Chr16:4005989 Car04g01446 Car-Chr4:8395801 3.85E-157 transposed
Car04g01446 Car-Chr4:8395801 Car04g02491 Car-Chr4:19784872 2.22E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01446 K09872 - csv:101204956 548.51