Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01459 ATGGGTCGGTCGGAGAAGGAGTTGAAAGATTTGGTGGTGGCTCAACTGCCGGAGTTTGTGAGGGAGATTTCGGAGCTTCCCGAGTGCAATGGCGTGTGTAAGAAGATGTATGGGGAGCTGATTCGAAGAGTGAAGTTGTTGAGTCCTATGTTTGAGGAATTGAGTGATGGAGAAGAAGAGCTTGGAATAGATGTTCTTAAGGGCTTGGAGTTGCTTAAAACTGCTTTGGATTCTGCTATGGAGCTTCTTAGGTCGGTCAACCGAGGCAGCAAGCTCTATCAGGCTTTGCAATTGGAGAAAATAGTACTTGAGTTTCAACATAAGACACAAGATATTGCAGCTGCACTCAGCAAGCTTCCCATCGACGAGCTCGGGATCTCAGACGAGGTTCGGGAACAGACTGAACTTGTTCAATCCCAATTCAAACAAGCGAAGGAGAGATTACATTTAGCACAGTTAGACAAGGATTTAGCCATATTACAGGAAGAAAAAGATCCTGACCTTGAAATGTTAAAAAAACTTTCTGAAAAGTTGCATATTCGGACTGTAAACGATCTGAAGAAAGAGTCTCAAGCGATCCATGGGCTGGCGATCTCGAGCGATGGAGACCCGGGGGATGTTTTCAGAAAAGTATCATCCATTTTAAAGAAGCTGAAGGATTTTGTACAAACAGAAAACCCAGAAGTTGAAACTTCCCAAGATAAAAAAAGTATCATCGTTGAACACAAATCTCCTGTCATCCCGGACGATTTTAGATGCCCTATATCTCTTGAAATGATGAGGGATCCCGTCATTGTCTCGACCGGGCAGACTTATGAGAGATCCTGCATTCAGAAATGGTTGGATTCAGGGCACATAACCTGTCCAAAATCTCAGCAGGTTTTAGTCCGTACAGCCTTAACCCCAAATTACGTTTTGAAGAGCCTGATTGCTTTGTGGTGTGATAACAATGGCGTTGAACTGCCAAGCAAGCAAGGTAGCTGTGTAAATAAGAAACCTGGAAACAGTATTTCAGACTGCAATCGGGCGGCCATCGATGCCTTACTGGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTACAGGTGAGCTCCGGTTACTAGCAAAGAGGAATTCGGATAACCGAATCTGTATTGCCGAGGCAGGAGCCATTCCATTCCTTGTCGAACTATTATCCTCAAATGATACTAGGACCAAGGAGCATGCAGTTACAGCAATGTTGAATCTTTCAATCAACGATGGTAATAAAAGAACGATAGTCGATTTACGAGCCATACCTGCCATAGTAGAAGTGTTGAAGAATGGCAGTATGGAAGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATCGACGAGAACAAGGTTGCGATCGGAGCAGCTGGGGCAATTCCTGCTCTTATCAGTTTGCTTTGTGAAGGTACACCCAGAGGGAAGAAGGATGCAGCCGCTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGAGCAGTAAGAGCAGGCATTGTTAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTTTGGCCATTCTTGCAACTCACCATGAAGGGAAGATGGCAATAAGGCAAACTAAGCCGACAGCGATTCTTTTAGAGTTCATCAGAACCGGTTCTCCACGAAATCAGGAGAATGCTGCTGCTGTGTTGTGGTCGCTTTGCAGTACTGATTTTGAGCAGTTGAAGGTAGCTAGGGAACATGGTGCAGAAGTGGCATTAAAGGAAGTATCTGAGAATGGGACAGAAAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACTCTTTGATGAACCATCTGCTAATCTATAA 1887 44.3 MGRSEKELKDLVVAQLPEFVREISELPECNGVCKKMYGELIRRVKLLSPMFEELSDGEEELGIDVLKGLELLKTALDSAMELLRSVNRGSKLYQALQLEKIVLEFQHKTQDIAAALSKLPIDELGISDEVREQTELVQSQFKQAKERLHLAQLDKDLAILQEEKDPDLEMLKKLSEKLHIRTVNDLKKESQAIHGLAISSDGDPGDVFRKVSSILKKLKDFVQTENPEVETSQDKKSIIVEHKSPVIPDDFRCPISLEMMRDPVIVSTGQTYERSCIQKWLDSGHITCPKSQQVLVRTALTPNYVLKSLIALWCDNNGVELPSKQGSCVNKKPGNSISDCNRAAIDALLVKLVNGSPEQKRSATGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTKEHAVTAMLNLSINDGNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAAAAIFNLSIYQGNKARAVRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKMAIRQTKPTAILLEFIRTGSPRNQENAAAVLWSLCSTDFEQLKVAREHGAEVALKEVSENGTERAKRKAGSILELFQLFDEPSANL 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8467132 8469742 + Carg01941-RA Car04g01459 146884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01459 628 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Car04g01459 628 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Car04g01459 628 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Car04g01459 628 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Car04g01459 628 Pfam Armadillo/beta-catenin-like repeat 415 454 IPR000225 GO:0005515
Car04g01459 628 Pfam Armadillo/beta-catenin-like repeat 457 495 IPR000225 GO:0005515
Car04g01459 628 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01459 Car18g00828 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01459 Car-Chr4:8467132 Car13g00102 Car-Chr13:732289 0 dispersed
Car18g00828 Car-Chr18:9305016 Car04g01459 Car-Chr4:8467132 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01459 - - csv:101221065 1025.0