Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01467 TACAGCCCCGCCAGAAGCATCCTCAAATTCCTCGCTCTACCTTCGAGGATGTTTCTTGTTCTTACCATTCTCTTGTTATGGATGTCTGGTTCTATCTTTTGTGTCGGTTCTGCTGCTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGACTCTGTTGCTGATGAACTTCAAAGGACAGTCAATGCATCTGTATGGAGAAGACAAATGCTGTCCGAATCGAAGGATCAAACTTCCTCGTGCCTCACCGGCAACCCCATCGACGATTGCTGGCGGTGCGACCCTAATTGGGCGGCGAACCGGCAGCGACTAGCCGACTGCGGCATCGGGTTCGGCCGCGACGCCATGGGTGGCAAAGGCGGAAAAATCTACATCGTTACCGACTCGTCGGATTCGGATCCGACGAACCCCACTCCGGGAACTCTCCGCCACGCTGTGATCCAATTCGAACCCTTGTGGATCATCTTCTCCACCGACATGAACATCAAGCTCAAATACGAACTTATCATCAACAACTTCAAAACCATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATCCATTCCGTGTCCAATATCATCATCCACAACATCCACGTGCACCACTGCAAACCCTCCGGCAATGCCAACATAAGGTCGACCCCGACTCATGTGGGGCATTGGGGGCTGTCGGACGGAGATGGGATATCGATATTCGACTCGAGGAAGATTTGGATCGACCATTGCTCGCTTTCATACTGCAAAGATGGGCTAATAGATGCAACAATGGGATCGACGGGGATAACAATATCAAACAGCTACTTCTCGCACCATGACAAGGTGATGCTGTTGGGGCACGACGACAAGTACACGCAGGACTCAGGGATGCAAGTCACCATAGCGTTCAACCACTTCGGCGAGGCGCTGAGCCAACGCATGCCGCGTTGTAGGTATGGCTACATTCATGTCGTCAACAATGACTTCACCGCTTGGGAAATGTATGCCATTGGCGGCAGTGCCCGCCCAACCATTAACAGTCAGGGTAACCGTTACACCGCGCCGGTGGACCCTAATGCCAAAGAGGTGACGAAACGTTTAGACACGGCGGAGACGGAGTGGGCGGCGTGGAATTGGCGGTCGGAGGGTGATATTTTGGTGAACGGCGCGTTTTTTGTGCCGTCCGGTGCCGGACTTAGCACCCAGTACGGTAAGGCCTCCAGCGTCGAGCCTAAGTCGGTGGCTCTCATCAATCAGCTCACTATGAACGCCGGCGTCTTCGGCGCCCCCAGGTATAATGTTGGTCAAGGAATTGTATATCCAGGGTTCAACGGTAGCAACCATGGGGATGGCGATGGCGGAAACACTGCCATAAGTAACAGTCCAATATATGGAAATGGCGGTGGTAGCAACGATGAATACTACGGAATGATATTTAAAGGTAATGGATATAGAGCATCATCTCTGTCGTCGTCATCGACAAACTTATGTATCCAAATTATAATAATTTTGTATATAGTCACAAATTATAGTGGTCTATTAATATTATAG 1551 51.19 YSPARSILKFLALPSRMFLVLTILLLWMSGSIFCVGSAASFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSESKDQTSSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDSDPTNPTPGTLRHAVIQFEPLWIIFSTDMNIKLKYELIINNFKTIDGRGANVHITGGGCITIHSVSNIIIHNIHVHHCKPSGNANIRSTPTHVGHWGLSDGDGISIFDSRKIWIDHCSLSYCKDGLIDATMGSTGITISNSYFSHHDKVMLLGHDDKYTQDSGMQVTIAFNHFGEALSQRMPRCRYGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTKRLDTAETEWAAWNWRSEGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVFGAPRYNVGQGIVYPGFNGSNHGDGDGGNTAISNSPIYGNGGGSNDEYYGMIFKGNGYRASSLSSSSTNLCIQIIIILYIVTNYSGLLIL 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8499852 8502735 - Carg01934-RA Car04g01467 146892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01467 516 Pfam Pectate lyase 171 349 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01467 Car-Chr4:8499852 Car08g00910 Car-Chr8:6115148 0 dispersed
Car15g00460 Car-Chr15:2447824 Car04g01467 Car-Chr4:8499852 0 wgd
Car18g00831 Car-Chr18:9330760 Car04g01467 Car-Chr4:8499852 0 wgd
Car04g01467 Car-Chr4:8499852 Car04g02458 Car-Chr4:19559525 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01467 K01728 - csv:101205739 859.751