Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01516 ATGAACTCAGTTCCCTTCATTTTCCTTCTCTTCCTCTCTCTCGGCCTCGCCGGAGCTTCCGATTCTCCTCCGCCGTCCGCCGTCCTCTGTAAATCCACTCTATATCCTAAGCTTTGCCGTTCGATTCTCTCCTCCATCCGATTCTCCCCCTCCGATCCATACGGCTACGGAAAATTCTCCGTCAAGAAGTGTCTCAAACAGGCGATCAAAATGTCGAGCGTTATCGGCGAGTATCTCGACCGAGGAGGCGATTCGAGGTTGAATCGGCAGGAGGTTGGCGCTCTGGAAGACTGCAGAGAGCTTTCCGATTCGAATGTGGAGTTTCTCCAGTCGATTGATGGCGTATTGGAGGCAGCGGAGGGCGTCGATGAGGAACTGGTGGAGCGTATTGAGAGTATTTTGAGCGCGATCGTGACGAACGGCCAGACTTGTATCGACGGATTGGTGGAGTCGAGAAGTAGTTTGGGGAATGCGCTAACGGCACCGCTGTTGAGCGCGGGGAAGCTGTACAGTGTATCGTTAGGACTGGTTAAGAACTCGCTGTCGCGGCGGTGGAAGAAGCGGAAGCAGAAGGGAGACGGCAAGGGAGGGAAATTCCCGGCGGCTGCGCAGAGCAGAGAGCCATTGAACACGCTAATCAAGAGACTACATACGATGGGTTCGTGCAACCAATCCACAAAGTGTTCGGAAAGGAAGCGCTTGTTGACTGATTTGGGCACCACAGGAATTTTGATCAACAACACTGTGGTTGTTAGCTCAACCGGTGCTGACAACTTCACATCAATCGGAGATGCAATTTCATTTGCTCCCAACAATTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTTAGACAAGGATACTACGACGAATACGTTATCGTCCCCAAGTACAAAACAAACATAATGCTCATTGGAGATGGCATTAACCGAACCGTCATCACGGGGAACCATAACGTCGTCGATGGTTGGACGACTTACAATTCCTCTACCTTTACTGTTTATGGGGATGGATTTGTTGCAATAGACATGACATTCAGGAACACAGCAGGAGCAGAGAAGCACCAAGCAGTGGCAGTGAGGAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGCTTTGAGGGATATCAAGACACTCTTTATGTACATTCCATGAGGCAATTCTACAGGGAATGCGACGTTTATGGCACCGTCGACTTCATTTTTGGCAACGCTGCTGCAGTATTCCAGCAATGTAATCTATACGCTAGAAAGCCACTCCCTAACCAAAAGAACGCCTTCACAGCGCAGGGCCGAACCGATCCGAACCAAAGCACGGGCATCTCAATCCACAACTGCACCATCAAGGCTGCCCCAGACTGGGTGATGGATTTGAATGAGACGACGAACTATCTCGGGCGGCCATGGAAGCCGTTCTCAAGGACGGTGTATATGCAGTCTTACATTGGGGATTTGATCAGCCCAGTGGGGTGGTTGGAGTGGAATGGAACGGTGGGATTGGACACATTGTATTATGGGGAGTTTGAGAATTATGGAGCAGGAGCTAACACGAGCTCGAGGGTCAACTGGGCTGGCCATAGCTTGATGAATATCACAGAGGCTATGAATTTTACTGTCTATAACTTCACCATGGGAGATACTTGGCTGCCCTATACAGATATCCCCTTCTCTCGAGGTTTGCTATGA 1689 49.91 MNSVPFIFLLFLSLGLAGASDSPPPSAVLCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKKCLKQAIKMSSVIGEYLDRGGDSRLNRQEVGALEDCRELSDSNVEFLQSIDGVLEAAEGVDEELVERIESILSAIVTNGQTCIDGLVESRSSLGNALTAPLLSAGKLYSVSLGLVKNSLSRRWKKRKQKGDGKGGKFPAAAQSREPLNTLIKRLHTMGSCNQSTKCSERKRLLTDLGTTGILINNTVVVSSTGADNFTSIGDAISFAPNNSMPQDGYFVIYVRQGYYDEYVIVPKYKTNIMLIGDGINRTVITGNHNVVDGWTTYNSSTFTVYGDGFVAIDMTFRNTAGAEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSMRQFYRECDVYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQSTGISIHNCTIKAAPDWVMDLNETTNYLGRPWKPFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFENYGAGANTSSRVNWAGHSLMNITEAMNFTVYNFTMGDTWLPYTDIPFSRGLL 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8807358 8810654 - Carg01884-RA Car04g01516 146941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01516 562 Pfam Plant invertase/pectin methylesterase inhibitor 29 174 IPR006501 GO:0004857
Car04g01516 562 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Car04g01516 562 Pfam Pectinesterase 249 547 IPR000070 GO:0030599|GO:0042545
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01516 Car18g00888 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01516 Car-Chr4:8807358 Car17g01015 Car-Chr17:8052657 6.39E-179 dispersed
Car18g00889 Car-Chr18:9779867 Car04g01516 Car-Chr4:8807358 1.13E-130 transposed
Car15g00913 Car-Chr15:5737801 Car04g01516 Car-Chr4:8807358 9.95E-98 wgd
Car18g00888 Car-Chr18:9777797 Car04g01516 Car-Chr4:8807358 9.42E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01516 K01051 - csv:101206112 960.288