Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01517 ATGAGAATAATCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCGTCTTCTTCCTCCTCCTGCATCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCTCCTCACCGGCCGCAATCTGAGAAAACCACAGCCAAACGACGGAGGAGGAATCAAGATGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGATCCAACAACGCCTCTCCCGCTCGGCGGAGCTCCATTTACAGAGGAGTTACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTCTGGGACAAGAGTTCATGGAATAACATTCAGAACAAAAAGGGTAGGCAAGGAGCCTACGACAACGAGGAAGCCGCAGCTCGAACTTATGACCTTGCTGCCCTCAAATACTGGGGCCCCGGGACCACGCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTTTCCAAGGAGGAATATTTGGCGTCGTTACGGCGGCAGAGCAGTGGTTTTTCCAGAGGCGTTTCCAAGTACCGCGGCGTTGCCCGGCACCACCACAACGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTTGGAAGCAAATATCTCTACTTGGGAACTTACAATACTCAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCCATTGAGTACAGAGGAGCCAATGCAGTCACCAACTTTGACATTAGCAATTACATTGGGAGGTTACAGAATAAATCATCACCAGATGACCCCAATTGCTCCCCTGCTTCTTCCCAGGGCGAAGTAGTACAACAACAACACGACGTGATTCAGCAGCAACAACAACAACAAATTGTATTCTCGGGCCCGCCCGACCTCCAGTTTTCGATCGAGAATAACCCCGCTATGGTTGTCATGGATGAACCTCCAACACAAGACGACCATGATCTCCATTGGTCTTTCTTAGACACGGGATTATTCGTGCACGTCCCTGACCTCCCACTTGAGAAATCGAGCGAGTTAGCTGACTTATACTTCGACGAGATCAGGTTTGAGGACGATATTGGGTTGATGTTCGAAGCAAGCTTAGAGAACAATAAGAACTGCGAAAGTAATAACAACAATGATGATGATGATAATGTTGAGGAGAAGGATGTCAACAACCGTAGTGAGAAAATCAGATTGTTCGCAGCTACTACGACAACTTCACCGTCTTCTTCATCGATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1281 48.01 MRIISSSSSSSSSSSSSSSSSSSSSSSSSSSSCIGSDSGIHNNNLAAPHRPQSEKTTAKRRRRNQDETKCQIHNHNANGSNNASPARRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQNKKGRQGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLQNKSSPDDPNCSPASSQGEVVQQQHDVIQQQQQQQIVFSGPPDLQFSIENNPAMVVMDEPPTQDDHDLHWSFLDTGLFVHVPDLPLEKSSELADLYFDEIRFEDDIGLMFEASLENNKNCESNNNNDDDDNVEEKDVNNRSEKIRLFAATTTTSPSSSSITTSVSCEFRV 426
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 8812436 8815459 - Carg01883-RA Car04g01517 146942
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car04g01517 426 MobiDBLite consensus disorder prediction 1 88 - -
Car04g01517 426 MobiDBLite consensus disorder prediction 1 51 - -
Car04g01517 426 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Car04g01517 426 MobiDBLite consensus disorder prediction 373 393 - -
Car04g01517 426 ProSiteProfiles AP2/ERF domain profile. 91 154 IPR001471 GO:0003700|GO:0006355
Car04g01517 426 Pfam AP2 domain 189 240 IPR001471 GO:0003700|GO:0006355
Car04g01517 426 Pfam AP2 domain 91 146 IPR001471 GO:0003700|GO:0006355
Car04g01517 426 ProSiteProfiles AP2/ERF domain profile. 190 248 IPR001471 GO:0003700|GO:0006355
Car04g01517 426 MobiDBLite consensus disorder prediction 71 88 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Car04g01517 Car18g00890 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01517 Car-Chr4:8812436 Car11g00872 Car-Chr11:5425205 6.03E-95 dispersed
Car06g00748 Car-Chr6:5168799 Car04g01517 Car-Chr4:8812436 1.16E-57 transposed
Car18g00890 Car-Chr18:9784440 Car04g01517 Car-Chr4:8812436 6.89E-172 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3367 PF00847 AP2 1.90E-09 CL0081 Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01517 - - csv:101206349 594.349