Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01520 ATGGGCATTCTTGACTCTGTCTCAGATTTAATCTCTGATTTTGTGACCATTTCCAGACAAAGGAACAAAAAACCATTGCAGACAGTGGAGATCAAAGTCAAAATGGACTGCGACGGCTGCGAGCGCCGAGTAAGAAACGCCGTCTCCAAAATGAAAGGCGTGAAGACGGTGGAAATAAACAGAAAACAGAGCAAAGTTACAGTGATGGGGTTCGTGGATGAGAACAGAGTGTTGAAGAAAGTTAGAAGAACGGGGAAAATGGCGGAGCTATGGCCATATGTGCCGTACAATGTGGTGGCGTATCCCTACGTGGCGCAGGCCTACGACAAAAGGGCGCCGGCGGGCTTCGTTAAAAACGCCGTTCAGGCAGTCCCAAGCCCTAATGCCGTCGACGAGAAGCTCACCACCATGTTTAGCGATGACAATCCTAACGGCTGCTTCGTTATGTAA 450 49.11 MGILDSVSDLISDFVTISRQRNKKPLQTVEIKVKMDCDGCERRVRNAVSKMKGVKTVEINRKQSKVTVMGFVDENRVLKKVRRTGKMAELWPYVPYNVVAYPYVAQAYDKRAPAGFVKNAVQAVPSPNAVDEKLTTMFSDDNPNGCFVM 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8836614 8838209 - Carg01880-RA Car04g01520 146945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01520 149 Pfam Heavy-metal-associated domain 32 86 IPR006121 GO:0046872
Car04g01520 149 ProSiteProfiles Heavy-metal-associated domain profile. 35 90 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01520 - - - csv:101210331 254.603
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01520 Car15g00891 CCT
Car04g01520 Car15g00891 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00319 Car-Chr1:1811438 Car04g01520 Car-Chr4:8836614 5.68E-58 dispersed
Car04g01520 Car-Chr4:8836614 Car14g00783 Car-Chr14:4541288 1.80E-61 dispersed
Car10g00777 Car-Chr10:4198935 Car04g01520 Car-Chr4:8836614 3.74E-17 dispersed
Car13g00491 Car-Chr13:7097037 Car04g01520 Car-Chr4:8836614 6.65E-20 dispersed
Car17g00274 Car-Chr17:1689265 Car04g01520 Car-Chr4:8836614 3.88E-14 dispersed
Car04g01520 Car-Chr4:8836614 Car15g00891 Car-Chr15:5407998 4.04E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g405 . . . . . . . . Cmo04g01532 Cmo18g00980 . Cma18g00977 Car04g01520 . . Cpe09g00341 Cpe01g01305 . . . . . . . Cla05g02249 Cam05g2415 Cec05g2432 Cco05g2477 Clacu05g2404 Cmu05g2270 Cre05g2388 Cone13ag0775 Cone19ag0778 Cone6ag0404 . . Csa05g02677 Chy10g01205 Cme10g00193 . Blo11g00737 Bda07g01440 . Bpe11g01612 . . . . . Cmo15g00986 . Cma15g00947 . Car15g00891 Cpe13g00375 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000822 5 3 1 1 4 2 5 2 2 2 3 2 5 3 3 6 2 5 5 2 3 2 2 2 3 2 3 5 4 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01520 Car_Chr04 FPKM 13.584488 12.788744 13.578449 13.100366 55.694668 53.932571 53.728428 7.280513 6.066072 6.682034