Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01528 ATGTCTCGGACGCTTTTGGTTTTGATTGTGTGTCTGAGTGCGTTGCGATTGGGAGCTTCGTTGGGATCGCGTTCGATCCTTAGAGCGGTTGCTGATAAGAACGGGGATTCTGAAGATTATGCAGTTGATTTGAACGCCACCAATTTCGATGCGGTTCTTAGGGATACTCCAGCTACCTTTGCGGTTGTTGAATTCTTTGCTCACTGGTGCCCTGCTTGCAGAAACTATAAGCCCCATTATGAAAAAGTTGCTAGGCTTTTCAACGGACCCAATGCTGTGCACCCGGGAAAAGTGTTAATGACAAGAGTGGACTGTGCATTGAAGATAAATACCAATCTCTGTGATAAATTTTCGGTGGGTCACTATCCTATGCTCTTTTGGGGTCCTCCTTCCAAATTTGTGTCTGGCAGTTGGGATCCTAAGCAAGAGAAAAGTGAAATACGTAATATCGATAATGGACGGACTGCAGAAAAGTTATTAAATTGGATAAATCAGCAAATAGGAAGCTCATTTGGCTTGGATGACAAAAAATTTGAAAATGAGCATCTGTCATCCAATATATCAGATCCAGGACAGATTGCTCGAGCAATCTATGATGTCGAGGAGGCGACATCCACTGCCTTTGATATTATCTTGGAACACAAGATGATCAAGTCTGAAACTCGAGCGCCCCTTATAAAATTTCTTCAACTTCTGGTGGTTCATCATCCTTCTATGAGGTGTCGAAAAGGTAGTGCAGAGATACTTGTAAACTTCAACGAGTTGAGCCCTGCAAATACGAAACAAGAAGAGGTTGCGGGTGCAGTTAAGAACTTTCAGATATGTGGAAAAGATGTTCCTCGTGGATATTGGATCTTCTGCCGCGGCAGCAAGAATGATACGAGGGGGTTTAGTTGTGGTTTATGGGTTCTACTGCATTCACTTTCTGTGAGAATTGAGGATGGAGAAAGCCAGTTTGCATTCACAACTATATGCGATTTCGTCCATACCTTCTTTGTTTGCGAGGAATGTCGCCAGCACTTTTACGAAATGTGTTCGAGCGTGTCTAGTCCTTTCAACAAAGCTCGTGACTTTGCCCTCTGGTTGTGGAGAACACACAACAAAGTCAATGAAAGATTATACAAAGAAGAAGAAACAATGGGAACCGCAGATCCAAAATTTCCAAAGATGATCTGGCCTCCAATGCAACTTTGCGCGTCCTGCTATCGTTCTCGCAACAACCAGAAGATCGAATGGGACGAGGATGAAGTACATACATTCTTGACCAACTATTATGGTAAAACACTCATCTCTCTATACAAAAGCAACAGTGCCCTTGGGAATGTTGGTGCCAAAGGAATTCTCGATGAGTCGACAACTTCGACAAATGCAGTCGCTGTGCCGGTGGGGGCTGCATTGGCAATCGCTCTAGCAAGCTGTGCGTTCGGAGTGCTCGCTTGTTACTGGCGTTCACAGCAGAAGAGTCGGAAGTATTACCACCAACGATACTCTTTAAAGAAATATGATTATTAG 1512 43.85 MSRTLLVLIVCLSALRLGASLGSRSILRAVADKNGDSEDYAVDLNATNFDAVLRDTPATFAVVEFFAHWCPACRNYKPHYEKVARLFNGPNAVHPGKVLMTRVDCALKINTNLCDKFSVGHYPMLFWGPPSKFVSGSWDPKQEKSEIRNIDNGRTAEKLLNWINQQIGSSFGLDDKKFENEHLSSNISDPGQIARAIYDVEEATSTAFDIILEHKMIKSETRAPLIKFLQLLVVHHPSMRCRKGSAEILVNFNELSPANTKQEEVAGAVKNFQICGKDVPRGYWIFCRGSKNDTRGFSCGLWVLLHSLSVRIEDGESQFAFTTICDFVHTFFVCEECRQHFYEMCSSVSSPFNKARDFALWLWRTHNKVNERLYKEEETMGTADPKFPKMIWPPMQLCASCYRSRNNQKIEWDEDEVHTFLTNYYGKTLISLYKSNSALGNVGAKGILDESTTSTNAVAVPVGAALAIALASCAFGVLACYWRSQQKSRKYYHQRYSLKKYDY 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8871491 8876972 - Carg01872-RA Car04g01528 146953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01528 503 ProSitePatterns Thioredoxin family active site. 62 80 IPR017937 -
Car04g01528 503 ProSiteProfiles ERV/ALR sulfhydryl oxidase domain profile. 290 392 IPR017905 GO:0016972
Car04g01528 503 ProSiteProfiles Thioredoxin domain profile. 19 168 IPR013766 -
Car04g01528 503 Pfam Erv1 / Alr family 299 393 IPR017905 GO:0016972
Car04g01528 503 Pfam Thioredoxin 43 144 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01528 K10758 QSOX; thiol oxidase [EC:1.8.3.2] - csv:101211805 892.108
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01528 Car18g00902 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01528 Car-Chr4:8871491 Car08g00368 Car-Chr8:2369351 2.09E-11 dispersed
Car18g00902 Car-Chr18:9854221 Car04g01528 Car-Chr4:8871491 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g398 . . . . . . . . Cmo04g01541 Cmo18g00987 . Cma18g00980 Car04g01528 Car18g00902 . Cpe09g00336 Cpe01g01311 . . . . . . . Cla05g02257 Cam05g2424 Cec05g2441 Cco05g2486 Clacu05g2413 Cmu05g2280 Cre05g2398 Cone13ag0784 Cone19ag0787 . . Lsi04g00200 Csa05g02669 Chy10g01198 Cme10g00203 Blo06g00991 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003860 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 2 9 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01528 Car_Chr04 FPKM 0.509434 0.798428 1.266752 1.044726 1.337133 1.462276 1.845378 0.0 0.094599 0.0