Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01534 ATGGGGAAACCGGATAAAGAGCGCCTCCTTCGAACTCTCAACTCGCATCTGAACACCATCCATGAAACTTTTCAGATGTTGGATCATAATCCATCGTCTTCCCTTGAAAAGGTGAGCTGGGAGGATGTTCTGAAAATGAGCGACCAAGTCTACAAGCAGGCGACTGTCGCTGGAATGGTGTGGACTGGAGGAAGACTAGAAGTTACAGAAATTGAGGAAAACATGGCATCTTACTTCAATATGCTGCAGGGTTTCCTCCTGGTTTCCCATGGGAGTAAAGTGGGTGCTGGCCCTACTTTATCTTCTGTTATCCATGCATCTGTGAAGCAAGTAATTGATTCAAGTTCTAAGTTATGGAAGGAATCCATCTCTTTGTATGGACCTCGGGATAGTAAGGATCAAAACCAAGTAGTTCCGCAGTTGGTTGGTGCAGTTTGGGAAGCTTGCTCTGCTCTTAAGAAAGCTCCTTCCACAAATGTAACTGCAATTGGCCGAGCCATAATGCAGGTTGCTGTATCGGTGAAGGACGTCCTCCGAGAAATGAAGGAGCTTAAACAAGGTCCCTTCGACTTGGACAACACCCCCGGAGAATCATCTAACAAAGTTGAAAGCAGTTTGCACTCGCAGGATGAGGGTAATACAAGCGATGATGCCGATATAGGTAACGATTTATCAGCCGAAGAGATGAGAGTTGCTCAATCTGCTATTAGCATCATATCTTCAATACTTCAAGTTATTAAGGAACTCATTCGCTCTATCACTAGTTTGCTTAAGCTGGAAAATGAAACCAACGAAAGTAACTTAGCAACCGTGGAGAATCTATTGAGGCTATGCCAAGGAATTGGAGTGCAGGTGGACGAGCTTGGAGCTTGTCTTTACCCCCCACAAGAGGTCCCTGCCATTAAAGAAGCTTCTGAGAAAATTTCTAGCTTTCTTGACAATATGCAGGCAGAGTTGGGAAGTCTTAATGGTAATTCGGAAGGCTTTCTTCAGGCATGCAACAATCTCCGAAATTCATTGAAGCAGCTCGAGATCGAACTAGGTGGCTTCACAGATTCTGATCTAGAAAGTAGAATGCAGAATGTAACGTTAAACGACTAA 1101 44.32 MGKPDKERLLRTLNSHLNTIHETFQMLDHNPSSSLEKVSWEDVLKMSDQVYKQATVAGMVWTGGRLEVTEIEENMASYFNMLQGFLLVSHGSKVGAGPTLSSVIHASVKQVIDSSSKLWKESISLYGPRDSKDQNQVVPQLVGAVWEACSALKKAPSTNVTAIGRAIMQVAVSVKDVLREMKELKQGPFDLDNTPGESSNKVESSLHSQDEGNTSDDADIGNDLSAEEMRVAQSAISIISSILQVIKELIRSITSLLKLENETNESNLATVENLLRLCQGIGVQVDELGACLYPPQEVPAIKEASEKISSFLDNMQAELGSLNGNSEGFLQACNNLRNSLKQLEIELGGFTDSDLESRMQNVTLND 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8913849 8916204 + Carg01866-RA Car04g01534 146959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01534 366 Pfam Grap2 and cyclin-D-interacting 42 316 - -
Car04g01534 366 MobiDBLite consensus disorder prediction 192 211 - -
Car04g01534 366 MobiDBLite consensus disorder prediction 186 221 - -
Car04g01534 366 Coils Coil 326 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01534 K21626 CCNDBP1, DIP1, GCIP; cyclin-D1-binding protein 1 - csv:101213885 590.112
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01534 Car18g00908 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00908 Car-Chr18:9887654 Car04g01534 Car-Chr4:8913849 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g384 . . . . . . . . Cmo04g01548 . . Cma18g00987 Car04g01534 Car18g00908 Sed07g2128 Cpe09g00330 Cpe01g01318 Bhi07g01256 Tan04g0793 Cmetu10g0036 Lac13g0546 Hepe01g1151 . . . . . . . . . Cone13ag0790 . . . Lsi04g00209 Csa05g02658 Chy10g01190 Cme10g00214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012569 0 1 1 1 1 1 2 1 1 1 1 1 3 1 1 0 1 2 1 1 1 0 1 1 1 0 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01534 Car_Chr04 FPKM 34.205009 35.962299 12.133764 12.707753 86.637657 90.269592 87.274055 30.63908 30.073322 30.366009