Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01538 ATGAAGGACCGTACTCCTTCCTCCAATGGCGCCGTTTACGTCCCTCCTCACCTCCGTCTCCGCTCCGTCGTTACTCGTTCTGATCGTTCCTCTGCTGTTTCTGCTGTTGACTGCAAGCTTAGGGAGGCTCCAGCCTCGCTGCTCGATTCCGGAACCATTCCTCCGCCTTGCCTTGATTCTCGATCTCAAGAACTCCTCTCGATGGGGAAATCGCGTTTTAATTCCGTGCACTATGATTTTGCCTGCGACGATGGGGCTCCCGTGGATAGCTGGATTTTATTTACTTTCTTACCAGACTGTTATGATAAATTATCGAAATATGTACAGGGTTTTTCACCTCCTGCTAACATTGATTTGTGGAAAAGGAAGTTAGCACTACTTTTACGTGACAAGGAGAAGCAAGAGTTAGTTTCAAGGGAGAAAAAAGATAGACATGATTTTGAGCAAATAGCTGCTTTGGCAAGTAGAATGGGACTTTTTAGCCATCTATATGCCAAAGTTGCTGTTTTTAGTAAGGTCCCGTTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGGGAGAAATTGAAGCTTTTTGAATATGATCAGGTTTCTTTGCCTCCTGGGTTGCTTAGAAGAGTTGATGAACATCTAGGAGAATTTCTCTCTCAAAAGTCTCGGTTTAAATGTTTTCAAGATAACTCTGTCTCTAGATCAAGCAGCAGTGGTAGCATTGCTACAGATGAAGGGCTTTTTGAGCAACCTGAGCTACAAGCATCTAGTAAGGCTGTGATGGAAAAAATTCTTTGGCGGAGAAGTTTGCATCTGCGTGATCAACAGCATGCTTGGCAGTCATCTCTAGAAGGAAGAGAAATGCTGGAATTCCGGAAAAATCTCCCTGCTTACAAGGAGAAGGATGCATTATTGACCACAATCTCACAGAATCAGGTTATTATTATTTCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAATTCATTTTGGAATCAGAAATAGAATCACTCCGTGGTGCTGTTTGCAGCATCATATGTACACAGCCAAGACGAATATCTGCTATGTCTGTCTCTGAGAGAGTTGCTTCTGAAAGAGGCGAGAAGTTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGATACTCATCTTCTCTTTTGCACCACCGGCATCTTGTTGAGAAGACTGCTGGTTGATAGAAATTTGAAAGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAAGATCTCCTTCCTCGTCGACCAGAATTGAGGTTGATTCTAATGAGCGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTTACATTCCGGGATTCACACACCCTGTCAAAACTCATTTTCTGGAGGATATTCTAGAAATGACGGGGTACAGATTAACTCCATACAATCAAATAGATGATTATGGTCCAGAGAAGACTTGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCTACTGTTCAGGATGCACTTATGGCAGCTGATTTTAACGAGTACAGTCTTCAAACTCAGGAGTCTTTATCGTGTTGGAATCCAGACTGTCTTGGATTTAATCTCATAGAATTTCTTCTAGTCAGTATATGTGAGAGTGAAATGCCTGGAGCTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTGAAGGAGAAACTTCAGTCTCATCCTTTATTAGGAGATCCAACTCGGGTCATGTTGTTGGCATGCCATGGCTCTATGGCCAGTTCAGAGCAGAGGTTAATATTTACTGAACCTGACAAAGGAGTGAGGAAGGTAGTGCTTGCAACAAATATTGCTGAGACAAGTATCACGATAAATGATGTTGTGTTTGTTCTGGATTGTGGAAAGGCAAAAGAAACATCGTATGATGCTTTAAACAACACTCCTTGTTTGCTTCCCTCTTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGTCGTGTTCAACCTGGAGAATGTTATCATCTATACCCTAGGTCTGTGTTTGATTCTTTTTTCGAGTATCAGCTACCCGAAATTTTGAGAACACCTTTACAGTCCCTCTGCTTGCAAATAAAAAGCCTAAAGCTTGGAAGTATATCAGAGTTTCTATCTAGGGCTTTGCAGTCGCCAGAGCTACTAGCGGTTCAGAATGCTATTGAATATTTAAAGATCATTGGAGCATTTGATGAGAGTGAAAATCTTACTGTCTTAGGTCGTTATTTGACTATGCTCCCAATGGAACCAAAATTGGGAAAGATGTTGATAATAGGTTCTATCTTCAATTGTTTGGATCCAATTTTGTCCATTGTTGCTGGCTTCAGTGTGAGAGACCCTTTTCTAACACCACTTGAGAAGAAGGACGCTGCAGAGGCTGCGAAGTCCCAATTTTCACGAGATCATAGTGATCACCTTGCCATTATCCGGGCTTATGAGGGGTGGAAAGAAGCTGAGAGGAACTTTGGTGGTTACGACTTCTGTTGGAAGAACTTCCTTTCTGTACAATCGATGAAGGCTATTGATTCATTAAGGAAGGAGTTTTTCTCTTTGCTTAGAGATACTGGTTTAGTTGATGAGCACTCGAACACGTACAATGCTTGGAGTCTAGATGAACGACTCATACGTGCAGTTATTTGCTGTGGCCTCTATCCTGGAGTTTGCTCCATTGTGATGCAGCATAATGAGAAGTCATTTTCTCTCAAAACTATGGAGGATGGCCAGGTACTTCTCTATTCGAACTCAGTCAATGCTCGAGAGTCGAGGATTCCATATCCATGGATAGTTTTCAACGAGAAGATAAAAGTGAACTCCATTTTCCTTCGAGATTCAACAGCTATCTCTGACTCAATGCTGCTTCTCTTTGGTGGAAGCATCTCAAAAGGTGATCAAGTGGGACACTTGAAAATGTTGGGCGGTTTTTTGGAATTTTTTATGAAACCTGATGTAGCAGAGACATATCAGAAATTAAGAATGGAACTTGAAGAGCTTATACAGATGAAGGTAAGTTGA 3120 42.12 MKDRTPSSNGAVYVPPHLRLRSVVTRSDRSSAVSAVDCKLREAPASLLDSGTIPPPCLDSRSQELLSMGKSRFNSVHYDFACDDGAPVDSWILFTFLPDCYDKLSKYVQGFSPPANIDLWKRKLALLLRDKEKQELVSREKKDRHDFEQIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREKLKLFEYDQVSLPPGLLRRVDEHLGEFLSQKSRFKCFQDNSVSRSSSSGSIATDEGLFEQPELQASSKAVMEKILWRRSLHLRDQQHAWQSSLEGREMLEFRKNLPAYKEKDALLTTISQNQVIIISGETGCGKTTQVPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIYIPGFTHPVKTHFLEDILEMTGYRLTPYNQIDDYGPEKTWKMSKQAPRKRKTQIASTVQDALMAADFNEYSLQTQESLSCWNPDCLGFNLIEFLLVSICESEMPGAILVFMTGWDDISSLKEKLQSHPLLGDPTRVMLLACHGSMASSEQRLIFTEPDKGVRKVVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRSVFDSFFEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIIGSIFNCLDPILSIVAGFSVRDPFLTPLEKKDAAEAAKSQFSRDHSDHLAIIRAYEGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDEHSNTYNAWSLDERLIRAVICCGLYPGVCSIVMQHNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDQVGHLKMLGGFLEFFMKPDVAETYQKLRMELEELIQMKVS 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8931767 8942552 - Carg01862-RA Car04g01538 146963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01538 1039 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 559 733 IPR001650 -
Car04g01538 1039 Pfam Helicase associated domain (HA2) 756 833 IPR007502 GO:0004386
Car04g01538 1039 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 472 IPR014001 -
Car04g01538 1039 Coils Coil 1023 1039 - -
Car04g01538 1039 Pfam DEAD/DEAH box helicase 305 455 IPR011545 GO:0003676|GO:0005524
Car04g01538 1039 Pfam Helicase conserved C-terminal domain 562 692 IPR001650 -
Car04g01538 1039 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 911 995 IPR011709 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01538 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101208774 1781.53
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01538 Car18g00910 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01538 Car-Chr4:8931767 Car10g00298 Car-Chr10:1440769 0 dispersed
Car01g00285 Car-Chr1:1579853 Car04g01538 Car-Chr4:8931767 8.54E-52 transposed
Car16g00357 Car-Chr16:2199170 Car04g01538 Car-Chr4:8931767 1.88E-177 transposed
Car18g00910 Car-Chr18:9903774 Car04g01538 Car-Chr4:8931767 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01538 Car_Chr04 FPKM 0.0 0.0 0.0 0.0 1.243562 0.652476 0.943059 0.0 0.0 0.0