Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01544 ATGGCTAAGTTCCCTTCAATTCCCCTGTTTTTTCTCCTCTGCAACATCTGTCTTTCCATGGCGTCTTTGAACGATGACCGCATTGCTCTTTTGTCTTTCAAACAGTCCATTTCTGAAGACCCATACGCCTCTCTCAGCAACTGGAATTCTTCTGATGAAACCCCATGTGGTTGGAATGGTGTTACATGCAAGGATCTAAGAGTTGTTTCTCTCAGCATTCCCAACAAGAAACTCAACGGTGTTCTTCCTTCTTCTCTGGGGTTTCTCTCCGAGCTTCGTCATGTGAATCTGAGGAGTAATAACCTCCATGGAGCCTTGCCATTACAGTTTTTCCAAGCTAATGGAATCCAAAGCTTGGTGCTTTATGGTAATTCCTTATCTGGGTCTGTGCCAAATGAGATTGGTAACCTCAAAAACCTTCAAATCTTGGATTTATCTCACAATTTCTTTAATGGGTCGTTGCCTGTTTCCTTAATGCAATGCAGAAGATTGAGAATTCTTGATCTTACTCGCAACAATCTTACCAATTCTCTGCCTAATGGGTTTGGTTCCAGTTTGAATTTCTTGGAAAACTTGGATCTTTCTTACAATAACTTCAATGGTTCAATTCCAGTGGATATTGGTAATCTGTCTAGCTTGCAAGGCACTGTTGATTTCTCTCATAATCTCTTCTCCGGCTCTATCCCACCCACCCTGGGAAACCTTCCTGAAAAGGTTTATATTGATCTTACTTATAATAATCTGAGTGGTTCAATCCCCCAAAATGGTGCTCTTATGAACAGAGGACCAACAGCTTTCATTGGGAATCCTGGCCTTTGTGGACCGCCATTGAAGAATCCATGTTCTTCTGAAGCCCCGGCTGCAAGTTCATCTTCACCAGACAATGGTAATAAGTATGGGAAAGGAGGGGTGAGTAAGAGCAGTTTGGTTGCAATAATCATAGGTGATATCATTGGTATTTGCCTGATTGGTGTTATGTTATCTTATTGCTATTTGAGGTTTTGGATTCATAGAAATGGGAAGAAGGCAGACCAATCTAAGTATGGTTTAGAGAAGGATGAGAAAGGAAGAAAGCATTGTCTGTGCTTTCAAAAGGGTGAATCCGAGAACGTTTCGGAGCATATCGAGCAGTTTGATTTGGTACCTCTGGATTCACGAGTCACGTTTGATCTCGACGAACTTCTCAAGGCATCGGCTTTCGTTTTGGGAAAAAGCGGTATCGGTATAGTGTATAAAGTTGTTCTTGAAGATGGACTCACTTTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCTCAAAGATTCAAAGAGTTTCAAACTGAAGTTGAAGCAATTGGGAAGTTGAGGCATCCAAATCTTGTTAGTCTCAGAGCATATTATTGGTCTGTTGATGAAAAACTGCTTATTTATGATTACATACCAAATGGGAACCTTGCATCTGCCATTCATGGGAAGCCCGGAACGACACTGTTTACGCCGCTACCATGGTCTACTCGGTTAAGGGTCATGGAAGGCATTGCGAAAGGGTTGGTTTACTTGCACGAGTTCAGCCCCAAAAAGTATGTTCATGGTAATTTGAGAACCAACAACATACTTCTTGGACACGACATGATACCACATATTTCGAATTTCGGGCTTGCCCGCCTTGTTAACATTGCTGGAGGTACTCCGACCGTGCAATCGAGTCATATGGCAGAAGAAAAACAACTAAAGTTTGCCACTTCTGAAGCTAGTACATTTAGTTCTAGTATGATTACTTACTACCAAGCTCCCGAATCGTTCAAAGTCGTGAAGCCATCGCAGAAATGGGACGTGTACTCGTATGGTGTGATATTACTCGAAATGATCACAGGAAGGTTGCCTATAGTTCAGGTGGGAGCCTCGGAAATGGATCTTGTTCAATGGATTCAACTCTGTATTGAGGAAAAGAAGCCGCTTTCGGACGTGATAGACCCGAGTTTGGCTCCAGACGACGATGCGGATGAGGAGATCATCGAGGTTTTGAAGATGGCATTAGGTTGTGTTCAAAATAGTCCAGAAAGAAGACCGGCAATGAGACATGTTTGTGATGGTTTGAGCAGGTTGGGTGTCACTCCAAACTGA 2100 42.71 MAKFPSIPLFFLLCNICLSMASLNDDRIALLSFKQSISEDPYASLSNWNSSDETPCGWNGVTCKDLRVVSLSIPNKKLNGVLPSSLGFLSELRHVNLRSNNLHGALPLQFFQANGIQSLVLYGNSLSGSVPNEIGNLKNLQILDLSHNFFNGSLPVSLMQCRRLRILDLTRNNLTNSLPNGFGSSLNFLENLDLSYNNFNGSIPVDIGNLSSLQGTVDFSHNLFSGSIPPTLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSEAPAASSSSPDNGNKYGKGGVSKSSLVAIIIGDIIGICLIGVMLSYCYLRFWIHRNGKKADQSKYGLEKDEKGRKHCLCFQKGESENVSEHIEQFDLVPLDSRVTFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNLVSLRAYYWSVDEKLLIYDYIPNGNLASAIHGKPGTTLFTPLPWSTRLRVMEGIAKGLVYLHEFSPKKYVHGNLRTNNILLGHDMIPHISNFGLARLVNIAGGTPTVQSSHMAEEKQLKFATSEASTFSSSMITYYQAPESFKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGASEMDLVQWIQLCIEEKKPLSDVIDPSLAPDDDADEEIIEVLKMALGCVQNSPERRPAMRHVCDGLSRLGVTPN 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8977076 8979418 - Carg01856-RA Car04g01544 146969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01544 699 Pfam Leucine rich repeat 91 148 IPR001611 GO:0005515
Car04g01544 699 Pfam Leucine Rich Repeat 163 183 IPR001611 GO:0005515
Car04g01544 699 Pfam Protein tyrosine and serine/threonine kinase 402 689 IPR001245 GO:0004672|GO:0006468
Car04g01544 699 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Car04g01544 699 ProSiteProfiles Protein kinase domain profile. 396 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01544 Car04g02015 CCT
Car04g01544 Car18g00920 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01544 Car-Chr4:8977076 Car04g01838 Car-Chr4:10650596 0 dispersed
Car18g00920 Car-Chr18:9971576 Car04g01544 Car-Chr4:8977076 0 wgd
Car04g01544 Car-Chr4:8977076 Car04g02015 Car-Chr4:15963145 2.02E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88812 PF07714 PK_Tyr_Ser-Thr 4.00E-27 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01544 - - csv:101215811 1195.26