Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01549 ATGGCGGCGTCCACTCGGCTGTCGTATTTGTCTCTCTATATTTGCTTACTCCACTTTACATGTCTTTATGCGTCTTCGAATGTAGATTTAGACGCTCTAATGGCGTTCAAAGCGGCGTCTGATAAAGGGAATAAGCTCACCACATGGAACTCTACCTCTAATCCATGTGCTTGGGATGGAGTTTCTTGCCTCAGAAATAGGGTCTCGAGGTTGGTTCTTGAGAATCTTGATCTTACAGGCTCTATGGCTCCTCTTACGGCTTTGACTCAGTTACGAGTGCTGAGCCTTAAGCGGAACCGTCTCTCTGGTCCCATTCCCGACCTCTCCAACTTCACTGCTCTCAAACTCGTGTTTCTATCGTACAATGAATTTTCCGGTGACTTCCCGGCTTCTTTTCGGTCTCTCGTCCGGCTCTACCGCCTCGATCTTTCTCACAATAACCTAACTGGAGAGATACCGGCTTCTGTTAAGCGTATGACTCATCTTCTCACTCTCCGGCTCGAAGATAACCGGTTTTCAGGTTCTATTTTGGAACTGAACCTGCCGAATCTTCAGGACTTCAATATTTCAGCGAACGGTCTCTCCGGCGAAATCCCCAAATCGTTGTCGACGTTTCCTGAGTCTTCTTTCGGCCAGAACTTGGGTTTGTGTGGTTCCCCTCTTCAGAGCTGTAAGAGCATTGTCAGTAATCCGACGGAACCTGGATCCGAAGGGGCAATTGCCTCGCCCATTACACGGCCGCGGAACCTCACTGTTTCATCTTCTCCGACTTCCCTTCCCGGAGTTTCACCTGAAACAAAGCCGGAAAATACACACCATCACAGCACTGGAAAGATAGGTTCTCTAGCACTAATCGCCATAATTCTCGGCGACGTTTTGGTGCTAGCAGTGGTCTCGCTTCTTCTCTACTGTTATTTCTGGAAAAACTCTGCTGACAAATCCCAAGACAGGAAGGGATCGTCGAAGCTTCCGGAGAGCGAGAAGATTGTTTACTCTTCTAGTCCATTTCCAGCCCAAGCCGGAACAGAGAGAGGCCGGATGGTGTTCTTCGAGGGAGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCCGCGGAAATGCTCGGTAAGGGTGGGTTCGGAACTTCGTACAAGGCGATTCTCGACGACGGCAATGTGGTGGCGGTGAAACGGCTGAAAGATGCTCAGGTTGGAGGAAAACGAGAGTTCGAGCAGCACATGGAGGTATTGGGAAGGTTGAGACATGCTAATATTGTAAGCTTGAGAGCTTACTATTTTGCAAGAGAGGAGAAGTTATTGGTATATGATTACATGCCCAATGGCAGCTTCTTCTGGCTTCTTCACGGGAACAGAGGTCCTGGACGGACGCCGTTGGACTGGACGACGAGGTTGAAGATTGCCGCCGGAGCGGCTAGAGGACTCTCCTTCATTCACAACTCCTGCAAGTCCCTCAGGCTCGCCCATGGCAATGTTAAATCCACCAACATCCTTTTAGACCAATCTGGAAATGCTCGCGTCTCCGATTTCGGATTGGCCCTTTTCACTCCCCCTTCCACTCCTCGATCCAACGGTTACCGGGCTCCGGAGTGCGGTGAGGGTAGAAAACTGACACAGAAGGCGGATGTGTACTCGTTTGGGGTTCTTCTCCTCGAGCTGCTTACTGGAAAGTGCCCTTCCGTTATGGAGAATGGCGGTGGATACGGCGGCGTGTTGGATTTGCCCCGGTGGGTTCAGTCGGTGGTGCGAGAGGAGTGGACGGCTGAAGTGTTTGATTTGGAGCTGATGAGATACAAAGACATCGAAGAGGAAATGGTGGGGCTTCTGCAGATCGCCTTGGCCTGTACATCGGCTTCGCCGGATCAACGGCCGAAGATGAGCCATGTGGTGAAGATGATCGAGGAGCTCCGAGGGATGGAGGTGTCGCCGTTCCATGACGGATCTGACTCGGTTACGGAGTCGCCGTCAGTTTCGGAGGGTACTTGCGGCGGAGGAGTCAGCCAGTAA 2007 51.37 MAASTRLSYLSLYICLLHFTCLYASSNVDLDALMAFKAASDKGNKLTTWNSTSNPCAWDGVSCLRNRVSRLVLENLDLTGSMAPLTALTQLRVLSLKRNRLSGPIPDLSNFTALKLVFLSYNEFSGDFPASFRSLVRLYRLDLSHNNLTGEIPASVKRMTHLLTLRLEDNRFSGSILELNLPNLQDFNISANGLSGEIPKSLSTFPESSFGQNLGLCGSPLQSCKSIVSNPTEPGSEGAIASPITRPRNLTVSSSPTSLPGVSPETKPENTHHHSTGKIGSLALIAIILGDVLVLAVVSLLLYCYFWKNSADKSQDRKGSSKLPESEKIVYSSSPFPAQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLRHANIVSLRAYYFAREEKLLVYDYMPNGSFFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLSFIHNSCKSLRLAHGNVKSTNILLDQSGNARVSDFGLALFTPPSTPRSNGYRAPECGEGRKLTQKADVYSFGVLLLELLTGKCPSVMENGGGYGGVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTSASPDQRPKMSHVVKMIEELRGMEVSPFHDGSDSVTESPSVSEGTCGGGVSQ 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8998814 9001505 + Carg01851-RA Car04g01549 146974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01549 668 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Car04g01549 668 Pfam Protein kinase domain 366 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01549 668 MobiDBLite consensus disorder prediction 642 668 - -
Car04g01549 668 MobiDBLite consensus disorder prediction 232 275 - -
Car04g01549 668 MobiDBLite consensus disorder prediction 647 668 - -
Car04g01549 668 MobiDBLite consensus disorder prediction 246 265 - -
Car04g01549 668 ProSiteProfiles Protein kinase domain profile. 363 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01549 668 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01549 Car18g00926 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00870 Car-Chr3:6958315 Car04g01549 Car-Chr4:8998814 4.61E-117 dispersed
Car04g00364 Car-Chr4:2058141 Car04g01549 Car-Chr4:8998814 1.71E-110 dispersed
Car04g01549 Car-Chr4:8998814 Car06g00374 Car-Chr6:2060553 1.17E-175 dispersed
Car16g00228 Car-Chr16:1286639 Car04g01549 Car-Chr4:8998814 1.03E-110 dispersed
Car18g00926 Car-Chr18:10004979 Car04g01549 Car-Chr4:8998814 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88813 PF00069 Pkinase 2.10E-34 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01549 - - csv:101217010 1195.65