Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01550 ATGTTGGTTACGCTTACGGCCATTCATAACAGCCACGCTGGTGGAGCCGTCGCCGCTATGGCTGATGCTTCTCCGGTGAATTCCTCAATGGAATCATGTTCCAGAATTGTCGCTGCGCAATCTCCGATTCTCATATTTGTCTTCTTTCACAAGGCTATACGTGCTGAGCTTGATCGCTTCCATCGCGACGCTATTGAATTCGCTACCAACCAGCAAAGTGGTGGCGATATTGGACCGTTGTTGCAGCGCTATCACTTCCTTCGAGCTGTTTATAAGCATCACTGTAACGCCGAGGACGAGGTCATCTTCCCGGCTTTAGATCTGCGAGTGAAAAATGTGGCAAGTACTTATTTCCTTGAACATGAAGGGGAGAGTGTTCTGTTTTGCCAATTGCTGGAGCTTCTGAATTCTAATGCGTTGGAGGAAGGGAGCTATAAGAGGGAGCTGTCATCTTGTGTCAGAGCTCTTCAGATATCAATATGCCAGCATATGTTCAAGGAAGAAGAACAGGTGTTCCCGTTACTTACAGAGAAGTTTTCTTTTGAAGAACAGGCATCATTAGTATGGAAATTTCTTTGTAGTATACCTATTCATATGCTGGAAGTCTTTCTTCCGTGGCTCTCTTCCTCTATTTCTCCGGATGAGCTTCAGATTATGTGCAAATGCTTGAGCAAAATTATCCCAGAGCAAAAGCTTCTTCAGAAGATAATATTTTCCTGGATGGAGGATGCAAGAACGACTCGTGCCAATCAAAGTTTGTATGACGAAAATTTAGACTTTCAATGTCTAGGTTCTCAGGTTCATGATCTTATATGTAGACCAGAGAAGGGGAATGACACTTCTGAATCAGCTAGAATTGGTAAAAGGAAATACATGGAGCAAAGCAATTTTACCTATTCTACTGTTTCAATTGCTTGCCCCATCAATGAAATATTATATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATTGCTGAGGCAGCTAGGGACCTACCATTGTCTTCTGATTTTTCTGAGTTGTCTGCACTAAAGGAGAGGCTGCAGTTTATTGCAGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTTCCTGCTGTAGATGCTGAATTATCTTTTGCTGACAAGCATGCAGAAGAAGAAATTCAATTTGATAAGCTTAGGCACTTGATAGAGAGTATCCAAGCTGATAGAGCTAAATATTCTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACCATCCAGAAGCACTTCCATGATGAGGAGTTGCATGTTCTTCCACTTGCTCGGAAGCATTTTGGACCTCAGAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAATGGATAGAGCGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAAGCAAGATCCTTTCTTCAGAATATGCAAATGGCAGCTCCAAAGTCGGATCATGCACTTGTTACACTATTTTCTGGTTGGGCATGCAAAGGTCATCCCAGGAGCCTTTGTTTTTCTGCAAGTGATCTTAGCCATTGTGCTGAACGGATATCGACTGGAAATGAAGAATCATGCTCCTCCTTTTCTTCTGCCAATGAAAAACCTTCTTGCATTCAGGCAACTGAGTGTGCCAGGCCATCCAAATGTGAGAAGGAAGTATGCCATGGAGACTTAAATGGCCGTCTTCCTTTGAAAAGCTCAAGCAAAAAACGTCAGTTCACTCGCTCGAAAAAATCTGCTTGTGTCCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGATCTCTGGCAGCAGCAAAATCATTGCGTTCTTTGTGTTTTGGTCCCTATGCTCCTTCTCTCAACTCCAGTCTTTTTAGTCTGGAGAATGATCCAATCTCCTGTGGCAGTGGTTCTAAGTCACGACCTATTGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTTTTTGGATAATGAATCTGTGAATCTCGATGACTGCAATGATACATTCTTTAGGCAATTTTGCGGTAGGTTTCATCTGTTGTGGGGTTTATATAAAGCTCATAGTAATGCAGAGGACGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTGAGTCACTCTTATACATTAGACCACAAACAGGAGGAAGAGCTATTTGAAGGTATTTCTACTGCACTTTCTAAGCTTACAAACGTTCGCAGAGACTTGAATGGTAAGAAAAACTGTAACGATTCAAATTGGATCATGTCTCATACCTCTGATATTGATGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGTAGATCAATCAGAGTGACACTTGACCAACATATTTTCCGTGAGGAATCGGAGTTGTTACCGTTGTTCCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTTCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCAGGAGGAGCAGAATAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGCCCTGCTACATCTCCACATTATATGGAATCTGTCAGTCATGTATCTGGAGGTTCTGATTCCCATGGCAACTGTGACCAGAAAAATGATTCGGTTTTCAAGCCTGGATGGAAAGAGATTTTTAGGATGAATGAAAATGAACTTGAATCAGAAATAAGAAACGTTGCCCGGGATTCAACCATTGACCCTAGGAGAAAAGATTATCTGATTCAGAACTTGATCACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCCCAAGCCACTGCAGGTGAAAACTCAGATGCAAAAGAACTGATTGCATGTGCCCCATCATTTCGTGATCCCGAGAAACAGATTTTCGGGTGTGAGCATTATAAAAGAAACTGTAAGCTTCTTGCAACTTGTTGTGGCAAGTTGTTCACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCGATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTACTGCATCTGTTTGCTCAACACCAGCCTGTGGTGGTCTCTCTATGGCAAAGTTCTACTGTAGTATTTGCAAACTTTTTGACGATGAAAGGGAAGTCTATCATTGTCCCTTCTGCAATTTATGTCGTCTTGGGAAGGGACTTGGTACTGATTTTTTTCATTGTATGACATGCAACTGTTGTTTGGCAATGAAGTTAGTTGATCACAAGTGCCATGAGAGGGGCCTAGAAACAAACTGCCCTATTTGCTGTGATTTTTTGTTCACGTCTAGTGAAAGTGTTAGAGCTCTCCCTTGTGGCCATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAGTCCTTGGGAGATATGACGGTATACTTCGGCATGCTTGACGCATTACTGGCATTGGAGGTACTCCCTGAAGAATACATGGAACGCTGTCAGGACATATTGTGCAATGACTGCTCCAACAAGGGGAAAGCGCGCTTCCACTGGCTGTACCATAAATGTGGGAATTGTGGATCTTACAATACCAAGGTGATTAAGGTTAGTTCAAGCTCCACACAGCAATGA 3711 41.77 MLVTLTAIHNSHAGGAVAAMADASPVNSSMESCSRIVAAQSPILIFVFFHKAIRAELDRFHRDAIEFATNQQSGGDIGPLLQRYHFLRAVYKHHCNAEDEVIFPALDLRVKNVASTYFLEHEGESVLFCQLLELLNSNALEEGSYKRELSSCVRALQISICQHMFKEEEQVFPLLTEKFSFEEQASLVWKFLCSIPIHMLEVFLPWLSSSISPDELQIMCKCLSKIIPEQKLLQKIIFSWMEDARTTRANQSLYDENLDFQCLGSQVHDLICRPEKGNDTSESARIGKRKYMEQSNFTYSTVSIACPINEILYWHNAIKKELNSIAEAARDLPLSSDFSELSALKERLQFIAEVCIFHCIAEDKVIFPAVDAELSFADKHAEEEIQFDKLRHLIESIQADRAKYSSAEIHKKLSSHADQIIKTIQKHFHDEELHVLPLARKHFGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPKSDHALVTLFSGWACKGHPRSLCFSASDLSHCAERISTGNEESCSSFSSANEKPSCIQATECARPSKCEKEVCHGDLNGRLPLKSSSKKRQFTRSKKSACVPGLGVDDNNLGMRSLAAAKSLRSLCFGPYAPSLNSSLFSLENDPISCGSGSKSRPIDNIFKFHKAISKDLEFLDNESVNLDDCNDTFFRQFCGRFHLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISTALSKLTNVRRDLNGKKNCNDSNWIMSHTSDIDDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTLKQATRNTMFSDWLNEWWEGPATSPHYMESVSHVSGGSDSHGNCDQKNDSVFKPGWKEIFRMNENELESEIRNVARDSTIDPRRKDYLIQNLITSRWIASQQMLPQATAGENSDAKELIACAPSFRDPEKQIFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPTASVCSTPACGGLSMAKFYCSICKLFDDEREVYHCPFCNLCRLGKGLGTDFFHCMTCNCCLAMKLVDHKCHERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVYFGMLDALLALEVLPEEYMERCQDILCNDCSNKGKARFHWLYHKCGNCGSYNTKVIKVSSSSTQQ 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9003448 9011281 + Carg01850-RA Car04g01550 146975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01550 1236 Pfam Hemerythrin HHE cation binding domain 648 809 IPR012312 -
Car04g01550 1236 Pfam Hemerythrin HHE cation binding domain 310 439 IPR012312 -
Car04g01550 1236 Pfam Hemerythrin HHE cation binding domain 48 175 IPR012312 -
Car04g01550 1236 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Car04g01550 1236 Pfam Zinc-ribbon 1168 1224 IPR039512 -
Car04g01550 1236 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Car04g01550 1236 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Car04g01550 1236 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Car04g01550 1236 Pfam Ring finger domain 1120 1162 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01550 Car-Chr4:9003448 Car10g00290 Car-Chr10:1392582 0 dispersed
Car10g00161 Car-Chr10:767033 Car04g01550 Car-Chr4:9003448 9.32E-14 transposed
Car11g00258 Car-Chr11:1423895 Car04g01550 Car-Chr4:9003448 1.05E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01550 K16276 - csv:101217252 2154.02