Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01551 ATGGGGACGAGTTCAAAGACGGAAGGACCTTCAACCCCGGCTCTTCGACGAGACCCATATGATGTATTGTCTGTGTCCAGAGATTCTACAGATCAGGAGATTAAGACTGCTTATAGGAAACTCGCGCTCAAGTATCATCCTGATAAAAATGTAGGGAATCCTGAGGCTTCAGAATTGTTCAAGGAGGTTGCTTATTCTTACAACATTTTATCTGATCCAGAGAAGAGAAGGCAGTATGACAGTGCAGGATTTGAGGCTCTTGATGTGGATGGTATGGACATGGAAATTGACTTATCCAATTTGGGGACTGTCAATACCATGTTTGCAGCTCTGTTCAGTAAGTTGGGTGTCCCCATTAAGACTACAATCTCAGCGAACGTTCTTGAAGAAGCTCTAAATGGAACGGTGACCATCAGACCTCTTCCTCTCGGAACATCAGTCAGCGGGAAGGTAGAAAAACAGTGTGCTCACTTCTTTGGTGTAACAATCAATGATCAGCAGGCTGCAGCAGGCATTGTTGTCAGAGTTACTTCCACTGCACAAAGCAAATTTAAGCTGCTATATTTTGAGCAAGATGCCAATGGTGGTTATGGTTTAGCCTTACAGGAGGATAGTGAGAAAACTGGCAAGGTTACATCTGTGGGGATGTATTTTCTACATTTTCAAGTATACAGAATGGATTCAACTATGAATGCGGTGGCAATGACCAAGGACCCGGAGGCTGCTTTTTTCAAGAGATTGGAAGGCCTTCAGCCTTGTGAGGTTTCAGAACTAAAAGCTGGAACTCATATATTCGCTGTCTATGGTGATAACTTCTTCAAGCCTGCAACATACACAATCGAGGCGATTTGTGCAAAATCATATGAAGAGACAACAGAGAAGCTTAAAGAAATCGAAGCTCAAATTTTAAGAAAGAGAAATGATTTGCGCCAATTCGAAAGTGAATATAGGAAGGCACTTGCACGCTTTCAAGAAGTCACAAATCGATACAGCCAGGAAAAACAATTTGTCGATGAGCTTCTAAAAATGAGAGATAATATCCACTCATCTTTCACCGTTTCCCGGCCAGCAAACCATAACGATAATGTCAGTGGCTTAAGTAATGGAAAAGTTGATGATTCAAAAGTTTGCACTCCTGGAGAAGATGGTGGCTCAGATGGAAAGGACAGACCTACCAAGAAGAAGTGGTTCAATCTTAACCTCAAAGGGTCAGACAAAAAGCTTGGTTGA 1230 42.36 MGTSSKTEGPSTPALRRDPYDVLSVSRDSTDQEIKTAYRKLALKYHPDKNVGNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDVDGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTIRPLPLGTSVSGKVEKQCAHFFGVTINDQQAAAGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSVGMYFLHFQVYRMDSTMNAVAMTKDPEAAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKPATYTIEAICAKSYEETTEKLKEIEAQILRKRNDLRQFESEYRKALARFQEVTNRYSQEKQFVDELLKMRDNIHSSFTVSRPANHNDNVSGLSNGKVDDSKVCTPGEDGGSDGKDRPTKKKWFNLNLKGSDKKLG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9012788 9016136 + Carg01849-RA Car04g01551 146976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01551 409 Pfam DnaJ domain 18 80 IPR001623 -
Car04g01551 409 MobiDBLite consensus disorder prediction 352 371 - -
Car04g01551 409 MobiDBLite consensus disorder prediction 352 396 - -
Car04g01551 409 MobiDBLite consensus disorder prediction 375 396 - -
Car04g01551 409 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Car04g01551 409 Coils Coil 288 329 - -
Car04g01551 409 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Car04g01551 409 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01551 - - - csv:101217482 769.615
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01551 Car15g00864 CCT
Car04g01551 Car04g02012 CCT
Car04g01551 Car18g00927 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01551 Car-Chr4:9012788 Car05g00803 Car-Chr5:7341627 1.04E-177 dispersed
Car15g00864 Car-Chr15:5087679 Car04g01551 Car-Chr4:9012788 2.21E-95 wgd
Car18g00927 Car-Chr18:10009449 Car04g01551 Car-Chr4:9012788 0 wgd
Car04g01551 Car-Chr4:9012788 Car04g02012 Car-Chr4:15929985 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g332 Blo01g00506 . Bda01g02065 . . . Bma14g01905 . Cmo04g01569 Cmo18g01016 . Cma18g01005 Car04g01551 Car18g00927 Sed06g1905 Cpe09g00315 Cpe01g01335 Bhi07g01301 Tan04g0834 Cmetu09g0646 Lac13g0518 Hepe01g1173 . . Cla05g02283 Cam05g2455 Cec05g2477 Cco05g2520 Clacu05g2451 Cmu05g2312 Cre05g2430 Cone13ag0815 Cone19ag0822 Cone6ag0433 Cone9ag0450 Lsi04g00239 Csa05g02067 Chy10g01164 Cme10g00241 . . Bda07g01722 . . Bpe02g02257 Bma01g00180 . . Cmo04g02170 Cmo15g00961 Cma04g02074 Cma15g00922 Car04g02012 Car15g00864 Cpe13g00398 . Bhi12g00831 . . . . . Lcy10g1477 Cla01g00569 Cam01g0595 Cec01g0584 Cco01g0610 Clacu01g0588 Cmu01g0560 Cre09g1949 Lsi09g00617 . Chy09g00895 Cme09g00772
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001619 2 4 2 1 1 2 3 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 1 2 2 3 5 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01551 Car_Chr04 FPKM 1.598545 2.002646 3.948693 3.435753 0.644575 0.822263 1.007985 0.907624 0.86156 0.947892