Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01555 ATGGCTGCTCTTCTTTCCTTATCTTCAAGTTCCCTGACCAGAACAGCCATTGCTCTGCCTCATCCAACCACTCCCTTCAAGGGAAATGTGAAGATTCTGAATTCAAAGCAGTTCAGCTTTTCTCCACTCAAGCTCAAATTCAAGGTGGGAGATGGAAAACCATTGGTTGTTCGCAGCCAGGCCGCTGCGTCTTCCTTGTCTGCCTCCCCCGTCGAGAGTGTGCGGTTCCGTCTGGACAATCTTGGACCACAGCAAGGTTCGAGGAAGAAGGGCAAGAGAAAGGGGAGAGGTATATCGGCGGGACAGGGTGGTAGCTGTGGATTTGGAATGAGAGGACAGAAATCAAGGTCTGGGCCTGGTGTAAGAAAAGGATTCGAAGGTGGACAGATGCCTCTTTATCGGAGAATTCCCAAACTTAGAGGAATTGCAGGAGGTATGCATGCTGGGTTACCTAAATATGTGCCAGTGAATCTGAAAGACATTGAAGCGGCAGGATTTCAGGAAGGGGAAGAGGTCTCTTTGGAAAGTTTGAAGGAGAAGGGTTTGATCAACCCATCAGGAAGAGAAAGGAAACTCCCATTGAAGATTTTAGCTGATGGAGAGCTAAGTGTGAAGCTAAATATCAAAGCTCGGGCGTTTTCATCAGCAGCAAAAGAGAAGCTTGAAGCCGTTGGCTGTTCCCTTACTGTATTACCTGGACGAAAGAAGTGGGTTAAGCCATCAGTGGCTAAGAACCTCGCACGGGCTGATGAATACTTCGCGAAGAAAAGGGCTGCAGCAGCTGCTGCAGAACAAGCTGACTGA 804 48.63 MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQAAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKPSVAKNLARADEYFAKKRAAAAAAEQAD 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9031431 9033202 + Carg01845-RA Car04g01555 146980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01555 267 Gene3D - 153 230 - -
Car04g01555 267 PANTHER BNAA06G33230D PROTEIN 5 263 - -
Car04g01555 267 TIGRFAM rplO_bact: ribosomal protein uL15 78 228 IPR005749 GO:0003735|GO:0006412|GO:0015934
Car04g01555 267 Hamap 50S ribosomal protein L15 [rplO]. 78 231 IPR030878 GO:0003735|GO:0006412|GO:0015934
Car04g01555 267 PANTHER 50S RIBOSOMAL PROTEIN L15 5 263 IPR005749 GO:0003735|GO:0006412|GO:0015934
Car04g01555 267 ProSitePatterns Ribosomal protein L15 signature. 195 225 IPR001196 GO:0003735|GO:0005840|GO:0006412
Car04g01555 267 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 102 228 IPR021131 -
Car04g01555 267 MobiDBLite consensus disorder prediction 77 126 - -
Car04g01555 267 SUPERFAMILY Ribosomal proteins L15p and L18e 79 230 IPR036227 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01555 K02876 RP-L15, MRPL15, rplO; large subunit ribosomal protein L15 - csv:101219060 417.157
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01555 Car18g00938 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01555 Car-Chr4:9031431 Car04g01916 Car-Chr4:11337052 2.73E-11 dispersed
Car18g00938 Car-Chr18:10066756 Car04g01555 Car-Chr4:9031431 2.07E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g314 . . . . . . Bma14g01904 . Cmo04g01573 Cmo18g01025 . Cma18g01015 Car04g01555 Car18g00938 Sed06g1895 Cpe09g00307 Cpe01g01339 Bhi07g01318 Tan04g0845 Cmetu10g1080 Lac13g0504 Hepe01g1185 . . Cla05g02293 Cam05g2466 Cec05g2487 Cco05g2530 Clacu05g2461 Cmu05g2322 Cre05g2440 . . Cone6ag0446 . Lsi04g00248 Csa05g02619 Chy10g01154 Cme10g00252 . . Bda07g01718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007017 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01555 Car_Chr04 FPKM 5.02187 5.060966 6.624787 6.543684 7.357448 7.305858 7.112764 9.750228 8.747556 10.558441