Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01566 ATGGAGAATCAGAACTCGAAGAAGCGGGATTGGGACGACTTGGCCGACTCGGAGGTCGGTTCGCCGGAGGTGAAGCGGCTTAGAGATGACCTTCTAGGTTTTCTCGACGAGTCCAATCTAGAACCGGCGACTCCCGATCTCGACTCGTTGATGAGGAGTTTCGAGGAAGAAATTGCTACCGCGTCGTCTTCTCCGGTGCCGGTGGTGGATTTAACGGCGGATTCCGGTGAGTCTCAGCCGGAGTTAGGCTACCTCTTGGAAGCCTCCGACGACGAGCTTGGTCTACCGCCTTCAGTTACTTCGAATAGCCAACAGGAGTTTGACGAAGCGACCGAGTTTGCTCGAGTAACGACCGATTCGTCTGAGACCAGTGAGATGTGGAGGTTTGAGGATCAGATCCCGAACTACGACGCTTTCGAACTGGAAGCCGGAGATATGTTTAGCGGCAACCACGCGGCCGAGTATGTGGGTTTGGATGGGCTGTTGGAGTATTCGAATCTGTGTTCTGATGCGTTGGATAACTCGGATTTTCTCTGGCGGCAAGAATCTCTACCGGCTCAATAG 564 53.72 MENQNSKKRDWDDLADSEVGSPEVKRLRDDLLGFLDESNLEPATPDLDSLMRSFEEEIATASSSPVPVVDLTADSGESQPELGYLLEASDDELGLPPSVTSNSQQEFDEATEFARVTTDSSETSEMWRFEDQIPNYDAFELEAGDMFSGNHAAEYVGLDGLLEYSNLCSDALDNSDFLWRQESLPAQ 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9078559 9079122 + Carg01834-RA Car04g01566 146991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01566 187 MobiDBLite consensus disorder prediction 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01566 - - - cpep:111808759 361.688
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01566 Car18g00947 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01566 Car-Chr4:9078559 Car18g00031 Car-Chr18:135657 1.46E-18 dispersed
Car10g00225 Car-Chr10:1078289 Car04g01566 Car-Chr4:9078559 2.87E-17 wgd
Car11g00243 Car-Chr11:1367165 Car04g01566 Car-Chr4:9078559 2.12E-18 wgd
Car13g00863 Car-Chr13:9170934 Car04g01566 Car-Chr4:9078559 3.81E-18 wgd
Car15g00846 Car-Chr15:4922950 Car04g01566 Car-Chr4:9078559 2.30E-42 wgd
Car18g00947 Car-Chr18:10118030 Car04g01566 Car-Chr4:9078559 1.52E-104 wgd
Car04g01566 Car-Chr4:9078559 Car04g01994 Car-Chr4:15427711 1.35E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g299 Blo01g00497 Blo16g01059 Bda01g02079 Bda11g01142 Bpe13g01342 . . . Cmo04g01586 Cmo18g01037 . Cma18g01027 Car04g01566 Car18g00947 Sed06g1883 Cpe09g00296 . Bhi07g01332 Tan04g0866 Cmetu10g1799 Lac13g0487 Hepe01g1199 . . Cla05g02306 Cam05g2480 Cec05g2502 Cco05g2544 Clacu05g2475 Cmu05g2336 Cre05g2453 . . . . . Csa05g02605 Chy10g01140 Cme10g00267 Blo06g00964 . . Bda11g01142 . Bpe02g02272 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001339 6 2 4 3 3 2 4 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 0 2 3 2 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01566 Car_Chr04 FPKM 3.38803 3.474041 11.60346 12.065851 15.9969 15.237363 16.461773 1.35876 1.169596 1.237326