Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01569 ATGGACGGGATTTGCATTGACCAAACCACTTCCACTGAATCCCAATCCACAAATTTCCCCCTCCTCAAATCTCCACCGCCGGAGACTAGTCTCTGCCGCGTCGGGAGTGGCTTCACCAGTGTCGTTCTCGACTCTGACTCATGCGGCGTCGAGGCAGAGTCACGGAAATTGCCCTCCTCCCGTTTCAAAGGAGTGGTCCCACAGCCCAACGGCCGCTGGGGCGCACAGATTTACGAGAAGCATCAGAGAGTATGGTTGGGGACTTTCAACGAAGAGGAAGAAGCAGCACGTGCATACGATGTGGCCGCCCAACGGTTCCGCGGCCGTGACGCTGTCACCAATTTTAAAGATGAAGACGACGACGACGACGACGACGTATCGGCCTTCCTCAACTCCCATTCCAAGGCAGAGATCGTGGACATGCTACGTAAACACACCTACTTACACGAGCTCCATCAAAGCAAACGAAACGCCGGGTTATCCGGTTTAGATCGCAAACATAACCGTTCGTTGTCCGGGTTGGATTCGGACGCTCGCGAACTTCTATTCGAAAAAGCCGTAACCCCAAGCGATGTAGGAAAATTGAACCGTCTCGTCATCCCAAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCCACCGCTTCCTCCAAAGGTCTGTTGTTGAACTTCGAGGACGGAGGAGGCAAAGTGTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAAAGCTACGTGCTAACCAAAGGGTGGAGCCGGTTCGTGAAAGAAAAGAATCTGAAACCCGGTGACATTGTGAGCTTCCTCAAATCTCCCGGACAGGACAAACAGCTGTACATCGAATGGAAGTCCAGAAAGGCGTCGCCCACAACCGACCCCAACATCAACCCGGTTCACATCGTCCGACTCTTCGGAGTTGACATCGTCAAAGCTTCTTCGCCAAACACTGGGTGCGGCGAGAAGAGGAGAGAATTGGAATTTTTCGCTTTTCAATGTACCAAAAAACAAAGGATAGTCGGAGCATTGTAA 1035 52.08 MDGICIDQTTSTESQSTNFPLLKSPPPETSLCRVGSGFTSVVLDSDSCGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDVAAQRFRGRDAVTNFKDEDDDDDDDVSAFLNSHSKAEIVDMLRKHTYLHELHQSKRNAGLSGLDRKHNRSLSGLDSDARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKPGDIVSFLKSPGQDKQLYIEWKSRKASPTTDPNINPVHIVRLFGVDIVKASSPNTGCGEKRRELEFFAFQCTKKQRIVGAL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9094245 9095279 + Carg01831-RA Car04g01569 146994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01569 344 Pfam AP2 domain 61 108 IPR001471 GO:0003700|GO:0006355
Car04g01569 344 ProSiteProfiles AP2/ERF domain profile. 61 116 IPR001471 GO:0003700|GO:0006355
Car04g01569 344 MobiDBLite consensus disorder prediction 1 20 - -
Car04g01569 344 Pfam B3 DNA binding domain 183 287 IPR003340 GO:0003677
Car04g01569 344 ProSiteProfiles B3 DNA-binding domain profile. 183 288 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01373 Car-Chr3:10390971 Car04g01569 Car-Chr4:9094245 7.92E-128 dispersed
Car04g01569 Car-Chr4:9094245 Car11g00706 Car-Chr11:4034084 5.30E-51 dispersed
Car10g00593 Car-Chr10:2997062 Car04g01569 Car-Chr4:9094245 6.03E-07 transposed
Car18g00968 Car-Chr18:10229397 Car04g01569 Car-Chr4:9094245 2.36E-178 wgd
Car04g01569 Car-Chr4:9094245 Car04g01958 Car-Chr4:13539041 5.45E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3373 PF02362 B3 2.50E-27 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01569 K09287 - csv:101203784 567.385